Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1406 ATGCAACGTTCCTGGACAAAGAACTTGCAACGCAGGTTTTTAATAAGTGAGCAAATGCAAACACAAATGATGATAGCAAAGCGAGTGAAGGAGCCATGTGATGTTTTCCTTAACCACAGATGCATGGACACAAAGAAAACCGTGGCTACTTTACTTTACGACCATCTTCTCCAACATGGTTTCAACCCTTTCTTGGACAACAAGAATATGAAGCCAGGGGACAAGTTATTTGATAAGATAAACAGTGCAGTTTTTGAGTGCAAGATTGGTGTGGCTGTTTTCTCACCACGTTATTGTGAGTCCTATTTTTGTCTTCATGAGCTTGCACTTCTTATGGGGTGTAGAAAGAAAATAATACCTATCTTCTGTGATGTTAAACCTTCTCAGTTGAAAGTTGTTAACAATGGAAAGTGGTCTGTGGAAGATTTCAGAAGGTTCAGATGGGCTATTGAGGAAGCTAAATCTACCGTGGGGCTCACGTTCAATTCCTCAAAAGGGAACTTATCTGAAATTGTGACTAGTGCTTCTGAAATCATTATTAGCAGCATGGTTGAGCTTGAGAATGAAGAGCAAATGCAGAAACACAACTCACCAATTTCTCTTTAG 606 0.3977 MQRSWTKNLQRRFLISEQMQTQMMIAKRVKEPCDVFLNHRCMDTKKTVATLLYDHLLQHGFNPFLDNKNMKPGDKLFDKINSAVFECKIGVAVFSPRYCESYFCLHELALLMGCRKKIIPIFCDVKPSQLKVVNNGKWSVEDFRRFRWAIEEAKSTVGLTFNSSKGNLSEIVTSASEIIISSMVELENEEQMQKHNSPISL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1406 201 PANTHER COP1-INTERACTING PROTEIN-RELATED 20 196 - -
Lal11g1406 201 SMART till_3 32 178 IPR000157 GO:0007165
Lal11g1406 201 Gene3D - 27 185 IPR035897 -
Lal11g1406 201 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 20 196 - -
Lal11g1406 201 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 155 IPR035897 -
Lal11g1406 201 Pfam TIR domain 34 130 IPR000157 GO:0007165
Lal11g1406 201 ProSiteProfiles TIR domain profile. 31 154 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1406 Lal-Chr11 17477410 17478563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1406 35 201 Miscellaneous Gene Families AT1G57670 27.368 1.92e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1406 - - ccaj:109788850 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1406 11 17477410 17478563 Lal11g1406 11 17477410 17478563 ECH
Lal20g0314 20 2482680 2484119 Lal11g1406 11 17477410 17478563 LSH