Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal11g1278 ATGGAACCTTCTACCTCATCCAACGCGTTCTCGTTTCTCTCTAAGGGTTGGAGAGAGGTTCGTGACTCGGCTGACGCGGATCTCCGTTTAATGAAGGACCGAGCCAACTCGTTCAGGAATCTAGCGACTTCGTTCGACCGTGAGCTTGAGAATTTCTTCAACTCCGCCGCTCCTCCTCCACCGTTCTCTGTCCCCGCCATGCGCTCTTCTCCTCCGCAGGAGATCGAATTCGTGAAGAATTTGCAGCCGAAGCTGTCGGAGATTCGCAGGGTGTACTCTTCCCCTGATTTCAGCAAGAAGGTTCTCGAGAAGTGGAAGCCGAAGGCGCGGATTCGGATTGATTTATCGGCGATTCGGAAGGCGATTGTGTCCGAGGTGGAGGAGGAGGAAGGTGATGAGGTTGTGGAATTTGAGAGGGGAAAGAGAGGGAGGAAGTTGAGTTTGAAGGAGTTTTGGGATTGGGGAGAGTGGAAAGGGGAGAGTGAAGCTCCTGATTGGGAACCAATTCGAAAATTGAAGAGTAGGTTTAAGGAGTTGGAGAAGAACAGTGAGTTTTTGGAGAATTTTAAGTCTAGCTTGAAATCAATATGCAGGGATCCTCAAGAGTCAAAGGAAGTTCCACCATTGGATGTACCTGAACTTCTAGCCTACTTTGTCAAACAATCCAGGCCTTTTTTGGATCAACTTGGAGTTAGAAGAGAGATATGTGACAAGATAGTAGAAAGCTTATATAGCAAACGCAAGAACCAACTTCTACTACAGTCCCTTTCTGGGCAAGAATCTGCTGTTGTTGGGAATGGAAACATAGATGATGAATTGGATTTGCGAATAGCAAGTGTCCTTCAGAGCACAGGGCACCGGTATGACGGAGGATTCTGGCCACACCCTGCAAAGCATGATGCGTCAGACAATGAAAGACATGTTGCAATAGTCACAACTGCTAGTCTTCCATGGATGACAGGAACAGCTGTAAACCCACTATTTCGTGCTGCATATTTATCACAATCTGCAAAGCAGAAAGTCACTCTGCTGATTCCATGGCTTTGTAAATCAGATCAAGAACTAGTTTATCCCAGCAATGTCACTTTCACTTCACCTGAGGAGCAGGAAGCTTATATTCGTAATTGGCTTGAGGAAAGGGTTGGTTTTAAGGCAGACTTCAAAATTTCCTTTTATCCCGGGAAGTTTTCAAAATCAAGACGTAGTATATTACCCGCCGGAGATACTTCTCAATTTATACCATCTAGGGACGCTGACATTGCAATTCTGGAAGAACCAGAACATTTGAATTGGTATCATCATGGTAAGCGTTGGACAGACAAGTTCAACCATGTTGTTGGTATTGTCCACACAAATTACTTGGAATACATAAAGAGGGAGAAAAATGGGGCTGTTCAAGCATTCCTTGTGAAACACATAAACAACTGGGTTACAAGGGCATACTGCCACAAGGTTCTTCGTCTCTCAGCTTCCACTCAAGATTTACCCAAGTCTGTAATTTGCAACGTTCATGGTGTGAATCCCAAGTTCTTAATAATCGGAGAGAAGATTGCTGCAGAAAGGGAGCTAGGGCAGAAGGCCTTCACAAAAGGGGCATATTTCTTGGGAAAGATGGTATGGGCAAAGGGATATAAGGAGTTGATAGATTTGTTAGCAATGCGTAAGACTGACCTTGATGGCTTCAAGCTGGATGTATTTGGAAACGGCGAGGATGCTAATGAAGTTCAGAGTGCAGCTAGGAGATTGGATTTGAATCTCAATTTTCAGAAAGGAAGGGACCATGCAGATGATTCTCTTCACGGGTACAAAGTCTTCATAAATCCTAGCATTAGCGATGTACTATGCACAGCTACAGCTGAGGCACTTGCCATGGGGAAATTTGTAGTTTGTGCTGACCATCCATCAAATGAGTTCTTCATGTCATTCCCCAACTGTTTGACTTACAAGACATCTGACGACTTCGTGGCAAAAGTAAAAGAAGCATTAGAAAATGATCCTTATCCTCTTACACCTGAGCAAAGATATCAACTTTCTTGGGAGGCTGCTACCCAAAGATTTATGGAATATTCCGAGCTCGATAAAATATTGAACAATGAAAAGGATGGCGCTAAGTCAAGCACGCACAGTAAAAAGCTCATCACCAAATCAGTGTCAATGCCTAATCTGGCAGAAGCTGTAGATGGTGGCTTAGCATTTGCTCACTACTGTCTGACAGGGAACGAATTACTGAGATTATGTTCAGGAGCAATACCTGGAACCCGCGACTATGACAAGCAGCACTGTAAAGACCTTAATCTATTGCCCCCGGAGGTCGAAAATCCTATCTATGGCTGGTAA 2337 0.445 MEPSTSSNAFSFLSKGWREVRDSADADLRLMKDRANSFRNLATSFDRELENFFNSAAPPPPFSVPAMRSSPPQEIEFVKNLQPKLSEIRRVYSSPDFSKKVLEKWKPKARIRIDLSAIRKAIVSEVEEEEGDEVVEFERGKRGRKLSLKEFWDWGEWKGESEAPDWEPIRKLKSRFKELEKNSEFLENFKSSLKSICRDPQESKEVPPLDVPELLAYFVKQSRPFLDQLGVRREICDKIVESLYSKRKNQLLLQSLSGQESAVVGNGNIDDELDLRIASVLQSTGHRYDGGFWPHPAKHDASDNERHVAIVTTASLPWMTGTAVNPLFRAAYLSQSAKQKVTLLIPWLCKSDQELVYPSNVTFTSPEEQEAYIRNWLEERVGFKADFKISFYPGKFSKSRRSILPAGDTSQFIPSRDADIAILEEPEHLNWYHHGKRWTDKFNHVVGIVHTNYLEYIKREKNGAVQAFLVKHINNWVTRAYCHKVLRLSASTQDLPKSVICNVHGVNPKFLIIGEKIAAERELGQKAFTKGAYFLGKMVWAKGYKELIDLLAMRKTDLDGFKLDVFGNGEDANEVQSAARRLDLNLNFQKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEFFMSFPNCLTYKTSDDFVAKVKEALENDPYPLTPEQRYQLSWEAATQRFMEYSELDKILNNEKDGAKSSTHSKKLITKSVSMPNLAEAVDGGLAFAHYCLTGNELLRLCSGAIPGTRDYDKQHCKDLNLLPPEVENPIYGW 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal11g1278 778 CDD Glycosyltransferase_GTB-type 437 639 - -
Lal11g1278 778 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, CHLOROPLASTIC 4 778 IPR044525 GO:0046481
Lal11g1278 778 Gene3D Glycogen Phosphorylase B; 530 684 - -
Lal11g1278 778 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 309 688 - -
Lal11g1278 778 Coils Coil 169 189 - -
Lal11g1278 778 Pfam Glycosyl transferases group 1 533 666 IPR001296 GO:0016757
Lal11g1278 778 PANTHER DIGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, CHLOROPLASTIC 4 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal11g1278 Lal-Chr11 16416788 16422057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal11g1278 8 600 Glycosyltransferase AT3G11670 68.801 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal11g1278 K09480 - gmx:100796354 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1278 11 16416788 16422057 Lal11g1278 11 16416788 16422057 ECH
Lal11g1278 11 16416788 16422057 Lal20g0195 20 1348070 1353894 LSH