Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1255 ATGGAGTGGATCAGACGTCAGTGTAATTTCAGTGTTACTATGTTGTACTTGTGTTACATGGTGTGGAAGTTGTTTGATAAGAGAAGGGACCAAGAGTGTTACATATTGGCCTACCAATGCTACAAGCCAAGTGATGATAGAATGCTTGGAACAGATTGTTGTGGAAAGATCATGGAAAGGAACAAGAACTTGGGTCTTAATGAGTACAAGTTCCTCCTCAAAGCTGTTGTGAGTTCTGGAGTTGGTGAGAAAACTTATGCCCCAAGAAACATCATCGAAGGCCGCGAGGCGAATCCAACATTGAATGATGGGATCATAGAGATGGAGGAGTTCTTCAATGACAACATTGCAAAGCTCCTTGCAAAAACAGGCATTTCTCCTTCACAAATTGATATACTTGTGGTAAATGTCTCTATGATTTCTTCTCATCCTTCCTTAGCTTCTAGAATCATTAACCATTACAAAATGAGACATGATATTAAAGCTTTCAACCTCACTGGTATGGGTTGTAGTGCTAGCCTTATTTCATTGGACATTATTAAGAACATTTTTATATCACAAAAGAACAAGTTTGCACTTTTGGTCACTTCTGAGTCTCTTGGTCCAAACTGGTATTCTGGCAATGACAGATCAATGATCCTTGCCAATTGTTTGTTTAGGGCTGGTGGCTGTGCCATGCTTCTCACAAATAATAGATCCTTAAAGCACAAAGCAATCTTGAGATTGAAGTGCTTAGTAAGAATTCATCATGGGGCTATAGAAGATGCTTACAATTGTTGTACTCAAAAGGAAGATGAACAAGGTAAGCTTGGATTTTACCTTTCTAAAAACCTCCCCAAGGCTGCTACAAGAGCTTTTGTTGATAACTTAAGGGTATTTTCCCCTAAGGTTTTACCAACTAGGGAGTTTATGAGGTATATGATTGTGTCTATAATAAAGAAGCTCAATAGAAATAGTTCCCCTAAGATTGCAACCCCAAATAAGTCACCATTAGACTTCAAAAGTGGAGTTGAACATTTTTGCCTCCACACAGGAGGAAAAGCAGTGATTGAGGGCATTGGAAAGAGCTTGGATCTATGTGACTATGATCTTGAGCCATCAAGGATGACACTACACCGTTTTGGGAACACATCAGCTAGTAGCCTTTGGTATGTGCTAGGGTATATGGAGGCAAAGAAGAGACTCAAGAAAGGTAATAGAGTAATGATGATAAGTTTTGGTGCTGGCTTTAAATGCAACAGTTGTTTATGGGAGGTAATGAAGGATTTGGTTGATACAAATGTGTGGGATGATTGTGTTCATCACTATCCACCACACTCCTTGGCCAACCCTTTCTTCGAGACCTTTGGTTGGATCAACAATGTTCAGGAACCAACCACTTTCATACTTTCAGATTTTCTCAAGTAA 1407 0.3945 MEWIRRQCNFSVTMLYLCYMVWKLFDKRRDQECYILAYQCYKPSDDRMLGTDCCGKIMERNKNLGLNEYKFLLKAVVSSGVGEKTYAPRNIIEGREANPTLNDGIIEMEEFFNDNIAKLLAKTGISPSQIDILVVNVSMISSHPSLASRIINHYKMRHDIKAFNLTGMGCSASLISLDIIKNIFISQKNKFALLVTSESLGPNWYSGNDRSMILANCLFRAGGCAMLLTNNRSLKHKAILRLKCLVRIHHGAIEDAYNCCTQKEDEQGKLGFYLSKNLPKAATRAFVDNLRVFSPKVLPTREFMRYMIVSIIKKLNRNSSPKIATPNKSPLDFKSGVEHFCLHTGGKAVIEGIGKSLDLCDYDLEPSRMTLHRFGNTSASSLWYVLGYMEAKKRLKKGNRVMMISFGAGFKCNSCLWEVMKDLVDTNVWDDCVHHYPPHSLANPFFETFGWINNVQEPTTFILSDFLK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1255 468 PANTHER 3-KETOACYL-COA SYNTHASE 9 458 - -
Lal10g1255 468 Pfam FAE1/Type III polyketide synthase-like protein 27 314 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lal10g1255 468 CDD CHS_like 14 417 - -
Lal10g1255 468 PANTHER 3-KETOACYL-COA SYNTHASE 9 458 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal10g1255 468 PIRSF Very_long_ch_3-ktacl-CoA_syn 1 449 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lal10g1255 468 Gene3D - 63 419 IPR016039 GO:0016746
Lal10g1255 468 SUPERFAMILY Thiolase-like 245 420 IPR016039 GO:0016746
Lal10g1255 468 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 336 418 IPR013747 -
Lal10g1255 468 SUPERFAMILY Thiolase-like 20 233 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1255 Lal-Chr10 18778374 18780350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g1255 21 465 Acyl Lipid Metabolism Gene Families AT2G28630 66.667 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1255 K15397 - gmx:100776947 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1255 10 18778374 18780350 Lal10g1255 10 18778374 18780350 ECH
Lal10g1255 10 18778374 18780350 Lal9g0244 9 1505158 1506582 PCT
Lal9g0244 9 1505158 1506582 Lal10g1255 10 18778374 18780350 PCT