Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1196 ATGCATTCTATTTCGCTTCCTTATTCTAACACACTCAATCTCAATCACATATTCTCTCCGAAGCGGGTCGCCCCAACTCCATTAACCGTTAGATGCGTTTATGGTTTTGAACCGTTAAACAAATCCGATTGGCAGAGTTCATGTGCCATCTTAACCAGCAACGTTGTCTCTCAGGAACATAACGACGGCGCTGCCGATCACTTTCCCGCCGTCAATGATCATAAAACTGCCTTCACTGATCTCAAACTCCTTCCCGTCGGAAAACTAGCCGTCGGTGAAAACATTAAACCTTTCCAACCGAAGCCGCTCACGATATCCGACCTATCTCCGGCACCGATGCACGGTTCGCAACTCAGAGTCGCGTATCAAGGTGTCCCCGGTGCATATTCCGAAGCCGCCGCCGGAAAAGCCTATCCAAACTGTGAAGCCATTCCGTGTGACCAGTTCGACGTCGCGTTCAAAGCGGTGGAGCTTTGGATCGCAGATCGAGCGGTTCTACCGGTGGAAAACTCCCTCGGTGGGTCTATTCACCGGAACTACGACCTACTCCTCCGTCATCGCCTCCACATCGTCGGCGAGGTTCAGCTCCCTGTGCACCACTGCCTCCTCGCTCTCCCTGGGATCCGAAAGGAGTATTTGACCCGAGTCATTTCACATCCACAAGCTCTTTCCCAATGTGAACACACTCTCACGAAACTAGGCCTGAACGTGGTGCGTGAAGCGGTTGACGACACTGCCGGCGCTGCAGAATTCGTTGCTAACAACTCCCTACGCGACACCGCAGCGATTGCGAGTGCACGCGCGGCAGATCTTTACGGTTTAAATGTTTTAGCAGATGGAATCCAAGATGACCCGAGTAACGTGACCCGATTCGTTATGCTGGCCCGAGAACCCATCATTCCAAGAACGGATCGTCCGTTCAAGACAAGTATCGTTTTCGCGCACGATAAGGGTACTTCGGTCCTTTTCAAAGTTCTATCAGCATTTGCGTTTAGGAATATAAGTTTAACGAAGATAGAATCAAGGCCTCATAGGAACCGTCCGATTAGGCTTGTTGATGATGAGAACGTGGGAACTGCGAAACACTTTGAGTATTTGTTCTACGTTGATTTTGAAGCATCTATGGCTGATGTAAGAGCACAAAATGCGTTATCAGAAGTTCAGGAATTCACGTCATTTTTGCGAGTATTGGGTAGTTATCCTATGGACATGACCCCATGGAATCCTTCCTCTTCTCTTCCAGATCATCATTAG 1254 0.4936 MHSISLPYSNTLNLNHIFSPKRVAPTPLTVRCVYGFEPLNKSDWQSSCAILTSNVVSQEHNDGAADHFPAVNDHKTAFTDLKLLPVGKLAVGENIKPFQPKPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFDVAFKAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGIRKEYLTRVISHPQALSQCEHTLTKLGLNVVREAVDDTAGAAEFVANNSLRDTAAIASARAADLYGLNVLADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDENVGTAKHFEYLFYVDFEASMADVRAQNALSEVQEFTSFLRVLGSYPMDMTPWNPSSSLPDHH 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1196 417 Gene3D - 303 404 - -
Lal10g1196 417 SUPERFAMILY Periplasmic binding protein-like II 119 302 - -
Lal10g1196 417 Gene3D - 203 284 - -
Lal10g1196 417 CDD ACT_CM-PDT 308 401 - -
Lal10g1196 417 ProSitePatterns Prephenate dehydratase signature 2. 336 343 IPR018528 GO:0004664|GO:0009094
Lal10g1196 417 Gene3D - 114 202 - -
Lal10g1196 417 ProSiteProfiles Prephenate dehydratase domain profile. 119 296 IPR001086 GO:0004664|GO:0009094
Lal10g1196 417 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 31 411 - -
Lal10g1196 417 CDD PBP2_Ct-PDT_like 119 298 - -
Lal10g1196 417 Pfam Prephenate dehydratase 120 298 IPR001086 GO:0004664|GO:0009094
Lal10g1196 417 ProSitePatterns Prephenate dehydratase signature 1. 272 294 IPR018528 GO:0004664|GO:0009094
Lal10g1196 417 ProSiteProfiles ACT domain profile. 310 401 IPR002912 -
Lal10g1196 417 SUPERFAMILY ACT-like 291 403 IPR045865 -
Lal10g1196 417 PANTHER AROGENATE DEHYDRATASE 31 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1196 Lal-Chr10 18413209 18414462 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1196 K05359 - gmx:100781285 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1196 10 18413209 18414462 Lal10g1196 10 18413209 18414462 ECH
Lal25g0221 25 1523349 1524602 Lal10g1196 10 18413209 18414462 LSH
Lal10g1196 10 18413209 18414462 Lal2g0331 2 2011669 2012940 PCT
Lal2g0331 2 2011669 2012940 Lal10g1196 10 18413209 18414462 PCT