Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g1110 ATGGGTTTTGTCAAATGGCTCAATTTGTTGACGATTTTTCATCTCTTTGCTGTAACACCCATTTTCTCATATTCCAGCTCTTTCACCTCCAAGTTCCTTGATTTAGCTAAGGAGCCTGAGGTCTTTGATTGGATGGTGGACATAAGAAGGAAGATTCATGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACCAGTAAGCTAATAAGATCAGAATTAACAAAATTGGGCATCCCATACAAACACCCAGTTGCAGTTACTGGTGTTATTGGGTTCATAGGGACTGGAAGCTCTCCTTTTGTTGCTTTAAGAGCTGACATGGATGCTCTAGCTATGCAGGAGCTGGTGGAGTGGGAGCATAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTTCTATGCTTCTTGGTGCTGCAAAGATCCTCAAAGCGCATGAGAAAGAGATACCAGGTACTATTATTCTTGTTTTTCAACCAGGAGAGGAAGGTCATGGAGGAGCTAAGAAAATCTTAGCTAGTGGAGCTTTAGAAAATGTTTCTGCAATATTCGGATTGCATGTTCACCCTAACGAACCAGTAGGTGAAGTGACTTCTAAGTCTGGTTCCTTAGCTGCAGGAAGTGGCTTCTTTGAAGCAATAATAAGTGGAAAGGGTGGTCATGCTGCTATTCCTCACCATGCTATAGACCCAATTGTGGCAACTTCAAATGTCATTATTAGCTTACAACATATTCTTTCTCGTGAGGTTAATCCTCTAGACCCTCAGGTTTTGACGGTAGGAAAATTTCAAGGAGGTGACGCATACAATGTTATTCCAGATTCTGTTACAATTGGTGGCACCTTCCGAGCTTTTTCAAGAGAAAGCGTGATGTATTTGAAAAAACGGATAGAGCAGGTTATTATAGGACAAGCTGCTGTGCATAGATGCAATGCAACGGTCAGCTTCCTAGATGAAGAAAAACCATATTTTCCCCCAACAGTTAACAATGAAGAGCTACACGAGTATTTTAACAGTGTGGTTGGGAACTTGCTTGGTGTGGATAAAGTAAAGAGGGCAAAACTATTGACAGCATCTGAGGACTTTGCATTCTATCAAGAAGCCATGCCTGGTTACATTTTCTTCCTTGGAATGGAGAATAAATCTGTTGAACAACTTCCCTCAGCACACTCTCCTTATTACAAAGTCAATGAAGATGCACTTCCTTATGGAGCTGCAATTCATGCATCATTAGCTTCTAACTATCTTCTCAAACTTCATCAGGATTTGCCACTAGTACAAGAGAAATATAATGATGAATTATAA 1317 0.4077 MGFVKWLNLLTIFHLFAVTPIFSYSSSFTSKFLDLAKEPEVFDWMVDIRRKIHENPELGYEEFETSKLIRSELTKLGIPYKHPVAVTGVIGFIGTGSSPFVALRADMDALAMQELVEWEHKSKVPGKMHACGHDAHVSMLLGAAKILKAHEKEIPGTIILVFQPGEEGHGGAKKILASGALENVSAIFGLHVHPNEPVGEVTSKSGSLAAGSGFFEAIISGKGGHAAIPHHAIDPIVATSNVIISLQHILSREVNPLDPQVLTVGKFQGGDAYNVIPDSVTIGGTFRAFSRESVMYLKKRIEQVIIGQAAVHRCNATVSFLDEEKPYFPPTVNNEELHEYFNSVVGNLLGVDKVKRAKLLTASEDFAFYQEAMPGYIFFLGMENKSVEQLPSAHSPYYKVNEDALPYGAAIHASLASNYLLKLHQDLPLVQEKYNDEL 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g1110 438 CDD M20_IAA_Hyd 45 420 IPR044757 GO:0009850|GO:0016787
Lal10g1110 438 Gene3D - 210 328 - -
Lal10g1110 438 SUPERFAMILY Bacterial exopeptidase dimerisation domain 210 329 IPR036264 -
Lal10g1110 438 PIRSF Amidohydrol_AmhX 30 424 IPR017439 GO:0016787
Lal10g1110 438 SUPERFAMILY Zn-dependent exopeptidases 40 420 - -
Lal10g1110 438 Gene3D Zn peptidases 45 405 - -
Lal10g1110 438 PANTHER AUXIN CONJUGATE HYDROLASE 1 438 - -
Lal10g1110 438 TIGRFAM amidohydrolases: amidohydrolase 45 407 IPR017439 GO:0016787
Lal10g1110 438 Pfam Peptidase dimerisation domain 211 305 IPR011650 -
Lal10g1110 438 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 438 IPR017439 GO:0016787
Lal10g1110 438 Pfam Peptidase family M20/M25/M40 102 417 IPR002933 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g1110 Lal-Chr10 17930276 17933065 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g1110 K21604 - gmx:100794121 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal10g1110 10 17930276 17933065 Lal20g1119 20 15421216 15433275 PCT
Lal20g1119 20 15421216 15433275 Lal10g1110 10 17930276 17933065 PCT