Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0725 ATGATAGCTTACTTAGAAGTAGAACACTTCGTGCACGGAAACGAAACCGAATCCATAAGAAACGACGACGTATCAGCTCTCGAAGCCAATTTCGATTTGAGCACCACCGGCATAGCCAGTAAAGACTTCGGCGGCATGAAATCCTTCAAACCCTTGGCCCTCATCAGGCCCACCACCGCCGCCGAAGTCGCGCAGGCTGTGAAAGCAGCGACGCGAACCTCCCACCTCACGGTGGCTGCCAGAGGCAATGGCCACTCCATTAACGGCCAGGCCATGGCGGACAAAGGTTTGGTCCTAGACATGCGAGCCATGGAGAATCACTATTTTCAGTTACTCTACCTCGATGGTTCCCCATACGTCGACGTTTCGGGAGGGGCATTATGGGAAGACGTGCTTAAACGCTGCGTTTTGCAGTTTGGGTTGGCACCAAGGTCATGGACTGATTACTTGAGTTTAACGGTGGGAGGAACGTTGTCTAACGCTGGCGTTAGTGGCCAGGCTTTCCGTTACGGCCCGCAAACGTCAAACGTAACGGAATTAGAGGTCGTTAACGGTAAAGGCGATACATTGATTTGTAACGAAACACAAAATTCAGAGCTTTTCTTTGCGACACTTGGTGGCCTTGGCCAGTTCGGTATCATCACTAGAGCCAGGGTCATGCTTCAACAAGCTCCACACATGGTGAAGTGGATAAGAGTGGTTTATTCTGAAATTGAGGACTTTACAAGGGATGCAGAGTGGCTGGTGATACGGCAAGAAGGGGAGGGTTTTGATTACGTGGAAGGATTCGTTTTTGTGAACAGTGATGACCCTTGCAACGGATGGTCCACAGTACCAATAGACCCACCAAACCAACGGTTCGACCCGGTTCATATCCCTTCAACCTCTGGTCCGGTTCTATATTGCTTGGAACTTGCCCTTCACTACCGTAATACGGACCACTCTTCTCATGTTGATATGGTAGTTGGTGGATTACTTAAACGGCTAGGATTCGTTGAGGGTCTAAAATTCGAGGTGGATATAACATACATGGAGTTCATGTTACGTGTAAATCGTGCGGAGGAGGAAGCAAAATGTAATGGCACTTGGGATGCACCTCACCCTTGGCTGAACATGTTCGTGTCCAAATCCAACATCATTGATTTTGATCGTGAAGTGTTCAAAAAGATTCTCAAGCACGGTGTTGGTGGCCCTATTTTAGTGTACCCTCTCTTAAGAAACAAGTGGGACAATCGTCACTCAGTAGTGGTGCCAGAAAGTAACATATTCTACATAATAGCATTGCTCAGATTTATTCCGCCACCACCTAAGGGACCACCTTCAGAATTGTTGGTAGCACAAAACCATGCAATTATTCAATTATGCTATAACAAAGGCTTTGATTTTAAGCTATATCTTCCTCACTATCAGTCACAGGAAAACTGGATGAGACACTATGGAGATAAATGGTCTAGATTTGTTGACAGAAAAGCTGTTTTTGATCCTTTGGCTATTCTTGCACCTGGACAGAGATTTTTTTCTAGAATCCCTCACCCTTTGTCTATTACATAA 1551 0.4642 MIAYLEVEHFVHGNETESIRNDDVSALEANFDLSTTGIASKDFGGMKSFKPLALIRPTTAAEVAQAVKAATRTSHLTVAARGNGHSINGQAMADKGLVLDMRAMENHYFQLLYLDGSPYVDVSGGALWEDVLKRCVLQFGLAPRSWTDYLSLTVGGTLSNAGVSGQAFRYGPQTSNVTELEVVNGKGDTLICNETQNSELFFATLGGLGQFGIITRARVMLQQAPHMVKWIRVVYSEIEDFTRDAEWLVIRQEGEGFDYVEGFVFVNSDDPCNGWSTVPIDPPNQRFDPVHIPSTSGPVLYCLELALHYRNTDHSSHVDMVVGGLLKRLGFVEGLKFEVDITYMEFMLRVNRAEEEAKCNGTWDAPHPWLNMFVSKSNIIDFDREVFKKILKHGVGGPILVYPLLRNKWDNRHSVVVPESNIFYIIALLRFIPPPPKGPPSELLVAQNHAIIQLCYNKGFDFKLYLPHYQSQENWMRHYGDKWSRFVDRKAVFDPLAILAPGQRFFSRIPHPLSIT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0725 516 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 225 506 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lal10g0725 516 Gene3D - 101 226 IPR016169 -
Lal10g0725 516 Gene3D - 228 465 IPR016170 -
Lal10g0725 516 PANTHER CYTOKININ DEHYDROGENASE 7 26 510 - -
Lal10g0725 516 Gene3D - 39 506 IPR016167 -
Lal10g0725 516 SUPERFAMILY FAD-linked oxidases, C-terminal domain 225 506 IPR016164 GO:0003824|GO:0050660
Lal10g0725 516 ProSiteProfiles PCMH-type FAD-binding domain profile. 47 224 IPR016166 GO:0071949
Lal10g0725 516 Pfam FAD binding domain 51 192 IPR006094 GO:0050660
Lal10g0725 516 PANTHER GULONOLACTONE OXIDASE 26 510 - -
Lal10g0725 516 SUPERFAMILY FAD-binding/transporter-associated domain-like 31 221 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0725 Lal-Chr10 14988579 14994868 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0725 K00279 - gmx:100816566 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0827 8 5947133 5954866 Lal10g0725 10 14988579 14994868 LSH