Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0589 ATGGATCCTTCTTCTCTCTCAAACGATGCCGTTTCACAGTTGAAAGACAAGGAGTCAATGGTTGACCCTTTCTTGGTCGAAGCTCTTCAGAACCCTCGTCATCGTGTCACTATTTTACGGATGGAGCTGGATATCCAGAGGTTTCTGAACAATGCTGATCAGCAGCATTTTGAGTTCCAGCATTTCCCTACTTCATATCTCCGACTGGCTGCACATCGTGTTGCTCAACACTATGGTCTGCAATCCATGGTTCAAGATAATGGCTTAGATGGCCAGGGAAGTAAGATTCTGGTGAGTAAGCTAGCAGAGAGCAAGTATCCCATGGTTCGTTTATCTGAAATACCCGTAAAACAGATGGAAAGTCATAAATCTGAGCAGAAAAAAGTTGTCCTCAAGCCTAGGCCTAATAAAAGTAGTTTCAATGAAGCCAATGATGCTGGCAAAAAAGGAAATCCTTGGAGAAGTGTAGAAGAGAGGAAGGAGGAATATGATCGGGCACGAGCACGTATCTTTAGTGGCTCTAGAAGTTCTGATTCAGATGATGTGCAATACCTGGTTCCAGTGGATGGGAAAACATCTTTTATGAGCAAGGATGAGAATGAAACTTTTAAGAACCCTGTGGCTGATTCAGAAGGAAGTACAAGTGTCAGGGATACTAGAGTTGCCATTTTCAGAGACAGGGAAAAGGATCGTATTGATCCAGATTATGATCGAAGCTATGGAAGGTATGCTAGGAATATGCCGGCCCCGGCTGTTAACTTGGTGCCTTTTAGTTTGCAAAATGTTCAACCTTCATATGCTCAATATGATACTAATTTTAATCAGTTCGCTCAAATGCAACAAGCTCAACCTTCACTTGGTTATGGACCTCCCGCAAGCCCGATAATGACTCCTTTTTATTCCCCGGGGTTGAATCAGACACCAACCGAGGGTGCTTACCAACAGTGGCCGAGTGCTACAATGATGTATGCACATTCATATGACCAATTCAGACATGGTGTTTTCCAGGTTCCATTTGGTCAACAACCCTTGAGCTTTGACTATTCACAAAACTACTAA 1059 0.4325 MDPSSLSNDAVSQLKDKESMVDPFLVEALQNPRHRVTILRMELDIQRFLNNADQQHFEFQHFPTSYLRLAAHRVAQHYGLQSMVQDNGLDGQGSKILVSKLAESKYPMVRLSEIPVKQMESHKSEQKKVVLKPRPNKSSFNEANDAGKKGNPWRSVEERKEEYDRARARIFSGSRSSDSDDVQYLVPVDGKTSFMSKDENETFKNPVADSEGSTSVRDTRVAIFRDREKDRIDPDYDRSYGRYARNMPAPAVNLVPFSLQNVQPSYAQYDTNFNQFAQMQQAQPSLGYGPPASPIMTPFYSPGLNQTPTEGAYQQWPSATMMYAHSYDQFRHGVFQVPFGQQPLSFDYSQNY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0589 352 CDD R3H_encore_like 34 100 - -
Lal10g0589 352 Pfam R3H domain 37 88 IPR001374 GO:0003676
Lal10g0589 352 SMART R3H_4 19 101 IPR001374 GO:0003676
Lal10g0589 352 MobiDBLite consensus disorder prediction 118 132 - -
Lal10g0589 352 Gene3D - 10 136 IPR036867 GO:0003676
Lal10g0589 352 ProSiteProfiles SUZ domain profile. 105 175 IPR024771 -
Lal10g0589 352 MobiDBLite consensus disorder prediction 118 159 - -
Lal10g0589 352 SUPERFAMILY R3H domain 9 121 IPR036867 GO:0003676
Lal10g0589 352 Pfam SUZ domain 125 174 IPR024771 -
Lal10g0589 352 ProSiteProfiles R3H domain profile. 35 102 IPR001374 GO:0003676
Lal10g0589 352 PANTHER OS05G0411600 PROTEIN 5 351 - -
Lal10g0589 352 PANTHER CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN 5 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0589 Lal-Chr10 13570271 13574475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0589 - - gmx:100814835 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0909 8 6752227 6755778 Lal10g0589 10 13570271 13574475 LSH