Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal10g0413 ATGGCTACTTCACAGCCAGCCCTTTCTTCTGGTCCAACCCACTCTCGCCCGCTCCAAGATCGAGTCGCAATCGTTACCGGTTCGTCCCGCGGAATAGGCCGAGAAATCGCGCTACACTTGAGTTCACTCGGTGCACGAATCGTCGTCAACTACAGCTCCAACTCGGACCGAGCTGACTCAGTCGTAACTCAAATCAACACCACCTACAACTCAGCCACCGCTCCGCAAGCTATCGCAGTCAAAGCCGATGTGTCCGATCCAGTCCAAGTGAACTCGCTATTTGACTCAGCTGAGTCAGCCTTCAACTCGCCGGTTAACATCCTAGTCAACTCTGCCGGAGTCCTAGACCCCAAATACCCAACCATAGCCAACACCACTGTGGAAAGCTTCGATAGCATCTTCACCGTGAACGCGAGAGGAGCGTTCCTGTGCGCCAGGGAAGCGGCTAACCGTTTGAAGCGTGGTGGCGGAGGGAGGATCATACTGCTGACAACTTCCCTAGTGGCGGCGCTGCGGCCGGGATACGGTGCATACGTGGCGTCGAAAGCGGCGGTTGAGGCGATGACAAAGATTCTTGCGAAGGAGCTGAAGGGGACGGGGATCACGGCGAACTGTGTCGCGCCGGGGCCGATTGCGACGGAGATGTTCTTTGAAGGGAAGACGGAGGAGATTGTAAACAGAGTTATACAAGAATCTCCGCTGGGTAGGCTTGGGGAAACTAAGGACGTGGCACCTTTGGTTGGGTTCTTGGCTAGTGATGCTGGTGAATGGGTCAATGGTCAAGTGGTTCGAGTCAATGGTGGCTTTGTTTAA 813 0.551 MATSQPALSSGPTHSRPLQDRVAIVTGSSRGIGREIALHLSSLGARIVVNYSSNSDRADSVVTQINTTYNSATAPQAIAVKADVSDPVQVNSLFDSAESAFNSPVNILVNSAGVLDPKYPTIANTTVESFDSIFTVNARGAFLCAREAANRLKRGGGGRIILLTTSLVAALRPGYGAYVASKAAVEAMTKILAKELKGTGITANCVAPGPIATEMFFEGKTEEIVNRVIQESPLGRLGETKDVAPLVGFLASDAGEWVNGQVVRVNGGFV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 22 39 IPR002347 -
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 178 197 IPR002347 -
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 199 216 IPR002347 -
Lal10g0413 270 PRINTS Glucose/ribitol dehydrogenase family signature 233 253 IPR002347 -
Lal10g0413 270 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 13 270 - -
Lal10g0413 270 CDD THN_reductase-like_SDR_c 18 270 - -
Lal10g0413 270 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 13 270 - -
Lal10g0413 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Lal10g0413 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 197 IPR002347 -
Lal10g0413 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 19 269 IPR036291 -
Lal10g0413 270 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 21 209 - -
Lal10g0413 270 Pfam Enoyl-(Acyl carrier protein) reductase 27 269 - -
Lal10g0413 270 Gene3D - 10 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal10g0413 Lal-Chr10 10156201 10157013 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal10g0413 16 269 Acyl Lipid Metabolism Gene Families AT1G24360 31.373 6.24e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal10g0413 K00059 - gmx:100809416 407.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g1036 8 8229250 8232353 Lal10g0413 10 10156201 10157013 LSH