Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2265 ATGGGCACAACAAAGCTGAGTCTTTTGTTGTGTGTTGGGGTTTTGCTGTTGGGGTGTTGTGTCGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAAGGTGACTTCTCCGAAATCGTTGAAGGGTACGTATGAATGTGCAATTGGGAATTTTGGGGTTCCCAAGTATGGAGGAACGTTGGTTGGTTCTGTTCTGTACCCAAAGGTGAATCAGAAAGGGTGCACCAACTTCAGTGATGTCAATTTTCAGTCCAAGCCAGGAGGGTTTCCCACTTTTCTTCTTGTTGATCGTGGAGATTGCTACTTCACTTTGAAGGCGTGGAATGCACAGAATGGTGGAGCAGCAGCTATTCTTGTAGCTGATGACAAGGCAGAAACGTTGATCACTATGGACACTCCTGAAGAAGGGAAAGCAAATGATGATTATGTGGACAAGATTAGTATTCCTTCTGCTCTTATCAGCAAATCCCTGGGGGATAGCATCAAGCAGGCTCTCTCTGACGGGGAGATGGTTAATATAAATCTTGATTGGAGGGAGTCTCTTCCGCATCCTGATGATAGAGTTGAGTACGAGTTATGGACAAATAGCAACGATGAGTGTGGGCCAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTAGCTCAGCAGCTGGAGAAGAAAGGGTTCACTCAATTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAAGCAGTGTAAATCTCAGTGCATAAACAATGGAAGGTACTGTGCTCCAGATCCTGAGCAAGATTTCAGTAGAGGATATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTAGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTTACTGACTTTGCAATTCGTTGCCCCATGAAAGAGAATAAGTACTCAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGATTGGTCAAGGCTCTCGTGGTGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAGACCTGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTTCTAACATTACTGCATGCAGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTATTGTTCAAAATGTGAAGTTTTTTGGAGATGGATATACCCACTGTGAAGCTTCAGGATCCCTGAGTTGTGAATTCAACAATGGTGGTTGTTGGAAGGGAGCCCAAGGTGGAAGGGCTTACTCGGCTTGTCTTGATGACTATAGAAAAGGTTGTACATGTCCACCTGGGTTCAGAGGTGATGGAGTCCAGTCATGTGAAGATATCGATGAGTGCAACGAGAAAACATCCTGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGGAGTTACGAGTGCAAATGCAAAAGTGGTTTGTTCTACTCACGAGAAAATGACACGTGTTTTGGTGAATATTCTGCTTCAGTGTTGAATATCTGGGTGATTATCCTCGTTTTGGTTGTTGCTGTTGCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATATATGGATTCGGAGATACGTACAATTATGGCCCAATACATGCCTTTGGATAGTCAACCTGATGTCTCTAATCAAGTCCATCACAATATCTAG 1860 0.4312 MGTTKLSLLLCVGVLLLGCCVGRFVVEKNSLKVTSPKSLKGTYECAIGNFGVPKYGGTLVGSVLYPKVNQKGCTNFSDVNFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAILVADDKAETLITMDTPEEGKANDDYVDKISIPSALISKSLGDSIKQALSDGEMVNINLDWRESLPHPDDRVEYELWTNSNDECGPKCDSLINFLKDFKGVAQQLEKKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSRGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFAIRCPMKENKYSEECSDQVIKSLGADLKKIKDCVGDPHADVENPVLKAEQDAQIGQGSRGDVTILPTLVINNRQYRGKLSRPSVLKAICSGYLETTEPSICLTSDLETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFFGDGYTHCEASGSLSCEFNNGGCWKGAQGGRAYSACLDDYRKGCTCPPGFRGDGVQSCEDIDECNEKTSCQCPGCKCKNTWGSYECKCKSGLFYSRENDTCFGEYSASVLNIWVIILVLVVAVAGGYAFYKYRIQRYMDSEIRTIMAQYMPLDSQPDVSNQVHHNI* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2265 619 Pfam PA domain 61 160 IPR003137 -
Gso9g2265 619 ProSitePatterns Calcium-binding EGF-like domain signature. 513 539 IPR018097 GO:0005509
Gso9g2265 619 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gso9g2265 619 SMART egfca_6 513 555 IPR001881 GO:0005509
Gso9g2265 619 Gene3D Laminin 467 551 - -
Gso9g2265 619 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 9 598 - -
Gso9g2265 619 SUPERFAMILY PA domain 91 169 IPR046450 -
Gso9g2265 619 CDD EGF_CA 513 544 - -
Gso9g2265 619 Gene3D Laminin 407 451 - -
Gso9g2265 619 PANTHER EGF-LIKE CALCIUM-BINDING DOMAIN, PA DOMAIN, THIOREDOXIN-LIKE PROTEIN-RELATED 9 598 - -
Gso9g2265 619 Gene3D - 21 183 - -
Gso9g2265 619 Pfam Complement Clr-like EGF-like 497 516 IPR026823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2265 Gso-Chr9 46906498 46912561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2265 5 619 Miscellaneous Gene Families AT3G52850 71.543 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2265 - - gmx:100806422 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso9g2265 9 46906498 46912561 Gso1g1097 1 44790909 44793081 PCT
Gso9g2265 9 46906498 46912561 Gso3g0029 3 265389 271555 PCT
Gso1g1097 1 44790909 44793081 Gso9g2265 9 46906498 46912561 PCT
Gso3g0029 3 265389 271555 Gso9g2265 9 46906498 46912561 PCT