Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2242 ATGTCAGGCTTGTATAATCCCAACTTCTCTCCTGCTAGAGCTGCTTCTCCTCAGATTAGGAGCAATCCAGAAGTGGACAGCCAGTACCTATCAGAGTTGCTGGCAGAACATCAGAAGCTTGGACCCTTCATGCAAGTGCTTCCCATATGCAGCCGCCTCCTAAATCAAGAAATATTAAGAGTTTCTGGAATGTTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGACATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTTATGTCCAATGTAAGTGGGACAGGGTTGGGTGGATGGAATAGTCTTCAGCAAGAGAGATTATGTGGAGCCCCTGGAATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCGTTCACTGTTAAGAGAATCTTGCGCTTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGACTTCTGGGGCCTAGAGGAAATTCTTTGAAACGGGTTGAAGCTACAACTGGTTGTCGTGTGTATATTAGAGGAAAAGGGTCGATAAAGGATCCAGACAAGGAAGAGAAATTACGAGGAAGACCGGGCTATGAGCATCTCAATGAACCACTGCACATTTTGATTGAGGCTGATTTACCTGCTAATGTTGTTGACATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAACTGCTCAAGCCTGTGGATGAGTCACAGGACTACATCAAGAGGCAGCAATTGCGTGAACTTGCTTTGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGTAGTGTGTCCCCATTCAACTCTAGTGGAATGAAACGTGCAAAGACGGGTCGCTGA 846 0.4504 MSGLYNPNFSPARAASPQIRSNPEVDSQYLSELLAEHQKLGPFMQVLPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSNVSGTGLGGWNSLQQERLCGAPGMTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELALLNSNFREESPGPSGSVSPFNSSGMKRAKTGR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2242 281 CDD SF1_like-KH 136 256 - -
Gso9g2242 281 SMART kh_6 131 231 IPR004087 GO:0003676
Gso9g2242 281 PANTHER RNA-BINDING PROTEIN RELATED 2 281 IPR045071 -
Gso9g2242 281 MobiDBLite consensus disorder prediction 256 281 - -
Gso9g2242 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Gso9g2242 281 MobiDBLite consensus disorder prediction 1 21 - -
Gso9g2242 281 Pfam KH domain 148 184 IPR004088 GO:0003723
Gso9g2242 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Gso9g2242 281 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 281 - -
Gso9g2242 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Gso9g2242 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Gso9g2242 281 MobiDBLite consensus disorder prediction 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2242 Gso-Chr9 46710493 46717707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2242 K14945 - gmx:100797384 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g1766 18 50083046 50089681 Gso9g2242 9 46710493 46717707 GST
Gso9g2242 9 46710493 46717707 Gso3g0015 3 163585 168449 PCT
Gso3g0015 3 163585 168449 Gso9g2242 9 46710493 46717707 PCT