Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0015 ATGTCGGGTCTGTATAACTCCAACTTCTCACCAGTGAGGGCTGCTTCTCCTCAGATTAGAACCAACCCAGAAGTCGACAGTCAGTACCTTACGGAGTTGCTGGCAGAGCATCAGAAGCTTGGTCCCTTCATGCAAGCCCTTCCCATATGCAGTCGTCTCTTAAATCAAGAAATATTAAGAGTTTCTGGAATGCTGTCCAATCAAGGTTTTGGTGACTTTGACAGACTGCGGCATAGAAGCCCTAGTCCTATGGCTTCTTCAAACCTCATGTCAAGTGTCACTGGAACGGGATTGGGTGGATGGAATAGTCTTCAGCAGGAGAGATTACGCGGAACTCCTGGAATGGCAATGGACTGGCAAGTTGCACCTGCAAGTCCTAGTTCATACACAGTTAAGAGGATTTTGCGCTTGGAAATTCCAGTTGATGCATACCCCAACTTCAATTTTGTTGGAAGGCTTCTGGGACCTAGAGGCAATTCTCTGAAACGGGTAGAAGCTTCTACAGGTTGTCGTGTGTATATTAGAGGAAAGGGTTCAATAAAAGATCCAGACAAGGAAGAAAAATTAAGAGGAAGACCAGGCTATGAGCATCTCAATGAGCAACTCCATATTTTGATTGAGGCTGATTTACCTGCTAATATTGTTGACATAAGGCTCCGGCAGGCTCAGGAAATTATAGAAGAACTGCTCAAACCTGTGGAAGAGTCTGAGGACTATATTAAGAGGCAGCAGTTGCGTGAATTGGCTATGCTGAATTCAAATTTCAGAGAAGAGAGTCCCGGACCAAGTGGAAGTGTATCTCCATTCAATTCCAGTGGAATGAAACGAGCTAAAACTGGCCGATGA 846 0.4504 MSGLYNSNFSPVRAASPQIRTNPEVDSQYLTELLAEHQKLGPFMQALPICSRLLNQEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNSLQQERLRGTPGMAMDWQVAPASPSSYTVKRILRLEIPVDAYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEQLHILIEADLPANIVDIRLRQAQEIIEELLKPVEESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0015 281 ProSiteProfiles Type-1 KH domain profile. 148 205 - -
Gso3g0015 281 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 138 256 IPR036612 GO:0003723
Gso3g0015 281 MobiDBLite consensus disorder prediction 255 281 - -
Gso3g0015 281 CDD SF1_like-KH 136 256 - -
Gso3g0015 281 PANTHER RNA-BINDING PROTEIN RELATED 2 281 IPR045071 -
Gso3g0015 281 Pfam Homodimerisation region of STAR domain protein 23 72 IPR032377 -
Gso3g0015 281 MobiDBLite consensus disorder prediction 1 20 - -
Gso3g0015 281 MobiDBLite consensus disorder prediction 256 281 - -
Gso3g0015 281 SMART kh_6 131 231 IPR004087 GO:0003676
Gso3g0015 281 Pfam KH domain 138 184 IPR004088 GO:0003723
Gso3g0015 281 Gene3D K Homology domain, type 1 19 262 IPR036612 GO:0003723
Gso3g0015 281 PANTHER STAR PROTEIN, HOMODIMERIZATION REGION-RELATED 2 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0015 Gso-Chr3 163585 168449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0015 K14945 - gmx:100781151 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0015 3 163585 168449 Gso3g0015 3 163585 168449 ECH
Gso18g1766 18 50083046 50089681 Gso3g0015 3 163585 168449 PCT
Gso9g2242 9 46710493 46717707 Gso3g0015 3 163585 168449 PCT
Gso3g0015 3 163585 168449 Gso18g1766 18 50083046 50089681 PCT
Gso3g0015 3 163585 168449 Gso9g2242 9 46710493 46717707 PCT