Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g2007 ATGGAAAACTCTGTTTCATCTCTCTCACTATGTTTCCCTCCAAACCCCAAAACCCACATTTTCCAAGCTTTCAGCTTTAGACCCTCCCCACGATCCCCACCACCACCCTCCAAAACCCACCACACAAAACCTCCCAGATTCACCACCCCCAGAAAGCACAGAACCAAAAAGCCAAAACCCTTCACCGAAAAAGACGCGTTTCCGAGCTCCCTACCCCTCCACAACAAAAACCCAATCTTCATCTTCAAAGACATCAAACGCTTCGCTCGCCAGAACAAGCTCAAGGAGGCTCTCACCATCTTGGACTACGTTGACCAGCGCGGCATCCCCGTCGACGCCACCACTTTCTCTTCTGTCGTCGCCGCGTGCATTCGTGCCAAGTCACTGCCACAAGGAAGGGAAGTTCACACCCACATCAGAATCAATGGACTCGAAAACAACTCTTTCTTGCGGACAAAGCTTGTTCACATGTACACCGCATGTGGGTCGTTGGAAGATGCGCAGAAGCTGTTTGATGGATTGCCCTGCGAGAGCGTGTACCCGTGGAACGCTTTGCTCAGAGGGACTGTGGTTTCTGGGAAGAGACAGTACATTGATGTGCTCAAGACTTATACTGAGATGAGGGCATTGGGGGTTGAGTTGAATGTGTATAGTTTCTCTAATGTGATTAAGAGTTTCGCTGGCGCGAGAGCATTTTCGCAAGGATTGAAGACTCATGGACTTTTGATTAAAAATGGATTGGTGGATAACTACATTCTTAGGACCAGTTTGATTGATATGTACTTCAAGTGTGGGAAGGTTAGGCTCGCGTGCCGGGTGTTTGAGGAAATTCCCGAGAGGGATGTTGTTGTGTGGGGGGCGATGCTTGCTGGGTTTGCGCACAATAGGTTGCAGAGGGAGGTGTTGGAGTATGTGAGGTGGATGGTGGAGGAGGGAGTGAAGCCAAATTCGGTTGTGATGACGATTGTTATTCCTGTGATCGGGGAGGTTTGTGCGAGGAGGTTGGGTCAGGAGTTTCATGCTTATGTTGTGAAAACTAAATCGTACTCTAAGCTGGTGCCCGTTCAGTCTTCTTTGATTGATATGTATTGCAAGTGTGGGGATATGATTTCGGCGAGACGGGTTTTTTATGGTTCAAAGGAGAGGAATGTGGTTTGTTGGACTGCTCTGATGTCGGGGTATGCTGCGAATGGGAAACTAGAGCAGGCGCTGAGGTCCACGATTTGGATGCAGCAAGAAGGGTTCAGGCCTGATGTGGTGACACTTGCCACTGTTCTTCCGGTTTGTGCACAGTTGAGGGCTTTGGAACAAGGGAAGCAGATTCATGCGTATGCTTTGAAACATTGGTTTCTGCCTAATGTGTCTGTAGCTTCTTCATTGATGACGATGTACTCCAAGTGTGGTGTTGTTGAGTATTCTAGAAGGTTATTTGATAATATGGAACAAAGGAATGTGATTTCATGGACCGCCATGATTGATTCGTATATTGAAAATGGGTATCTGTGTGAAGCACTTGGTGTGATTAGGTCAATGCAATTGTCAAAGCACAGGCCAGACTCTGTTGCTATTGGAAGGATGTTGAGTGTTTGTGGTGAACGAAAACTTGTGAAGCTTGGGAAGGAGATTCATGGGCAGATATTGAAAAGGGACTTTACATCAGTCCATTTTGTTTCTGCAGAACTTATCAATATGTATGGTTTCTTTGGAGATATTAATAAGGCCAATTTGGTGTTTAATGCAGTTCCAGTTAAAGGTTCTATGACATGGACTGCTCTTATTAGGGCCTATGGATATAATGAATTGTATCAAGATGCAGTTAACCTTTTTGATCAAATGAGATATTCTCCAAACCACTTTACCTTTGAAGCCATTCTATCTATATGTGACAAAGCTGGATTTGTTGATGATGCTTGTAGAATCTTCAATTCAATGCCTAGATATAAAATTGAAGCATCTAAGGAACACTTCGCTATTATGGTGCGATTACTTACACACAATGGTCAACTAGAGAAAGCTCAGAGATTTGAACAAATGAGTTCTTTCTTGTAG 2049 0.4505 MENSVSSLSLCFPPNPKTHIFQAFSFRPSPRSPPPPSKTHHTKPPRFTTPRKHRTKKPKPFTEKDAFPSSLPLHNKNPIFIFKDIKRFARQNKLKEALTILDYVDQRGIPVDATTFSSVVAACIRAKSLPQGREVHTHIRINGLENNSFLRTKLVHMYTACGSLEDAQKLFDGLPCESVYPWNALLRGTVVSGKRQYIDVLKTYTEMRALGVELNVYSFSNVIKSFAGARAFSQGLKTHGLLIKNGLVDNYILRTSLIDMYFKCGKVRLACRVFEEIPERDVVVWGAMLAGFAHNRLQREVLEYVRWMVEEGVKPNSVVMTIVIPVIGEVCARRLGQEFHAYVVKTKSYSKLVPVQSSLIDMYCKCGDMISARRVFYGSKERNVVCWTALMSGYAANGKLEQALRSTIWMQQEGFRPDVVTLATVLPVCAQLRALEQGKQIHAYALKHWFLPNVSVASSLMTMYSKCGVVEYSRRLFDNMEQRNVISWTAMIDSYIENGYLCEALGVIRSMQLSKHRPDSVAIGRMLSVCGERKLVKLGKEIHGQILKRDFTSVHFVSAELINMYGFFGDINKANLVFNAVPVKGSMTWTALIRAYGYNELYQDAVNLFDQMRYSPNHFTFEAILSICDKAGFVDDACRIFNSMPRYKIEASKEHFAIMVRLLTHNGQLEKAQRFEQMSSFL* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g2007 682 Gene3D Tetratricopeptide repeat domain 431 543 IPR011990 GO:0005515
Gso9g2007 682 Gene3D Tetratricopeptide repeat domain 354 430 IPR011990 GO:0005515
Gso9g2007 682 Gene3D Tetratricopeptide repeat domain 81 193 IPR011990 GO:0005515
Gso9g2007 682 Gene3D Tetratricopeptide repeat domain 194 353 IPR011990 GO:0005515
Gso9g2007 682 Gene3D Tetratricopeptide repeat domain 555 680 IPR011990 GO:0005515
Gso9g2007 682 PANTHER OS07G0578800 PROTEIN-RELATED 31 675 IPR045215 GO:0003723|GO:0009451
Gso9g2007 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Gso9g2007 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Gso9g2007 682 Pfam PPR repeat 458 485 IPR002885 -
Gso9g2007 682 Pfam PPR repeat 588 613 IPR002885 -
Gso9g2007 682 Pfam PPR repeat 255 281 IPR002885 -
Gso9g2007 682 Pfam PPR repeat 486 512 IPR002885 -
Gso9g2007 682 Pfam PPR repeat family 382 429 IPR002885 -
Gso9g2007 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Gso9g2007 682 TIGRFAM PPR: pentatricopeptide repeat domain 588 613 IPR002885 -
Gso9g2007 682 TIGRFAM PPR: pentatricopeptide repeat domain 486 520 IPR002885 -
Gso9g2007 682 TIGRFAM PPR: pentatricopeptide repeat domain 255 283 IPR002885 -
Gso9g2007 682 MobiDBLite consensus disorder prediction 44 58 - -
Gso9g2007 682 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 31 675 - -
Gso9g2007 682 MobiDBLite consensus disorder prediction 22 70 - -
Gso9g2007 682 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 617 651 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g2007 Gso-Chr9 44552443 44554781 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g2007 299 679 Glycoside Hydrolase AT3G49170 26.515 1.14e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g2007 - - gmx:100809249 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g0921 3 32805351 32808185 Gso9g2007 9 44552443 44554781 PCT