Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g1261 ATGAGTTTCGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGCTTCCTCACCCACTCCCGCTCCGACTTCGTTCCTCTCCAGCCCGACGACCTCGACGCTGCCGAGTGGTCCTCCCGCCCCCGCCACCACGTTGGCCCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCGGTCCGCCTCCAGGAGGACCAGCAGCCCAAGGATGCCTCCGACGACTCCCGCCGCGGTACCCTCCTCGACGGCATTGCCGGGGCCTCCCTCGAGCTCGAGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGAAGAGAGATTCTATCATCTTAACTTTCGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGATTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGTTGGTTCTGGTTTAGTTGGGGATGATGATGCCTTTGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTTATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAACGTGAGCTCACATGGGCTGGGCGTGTCTCATGGACGCATCACACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCATGATGCATACAAGCTTCTTGCGGTGCCATCGCCAATAGGTGGCGTTCTTGTAATTGGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAACAACTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTTGAGCTTGATGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGCGAACTGCTATTGCTTATGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAATTCTCTGTTTTTCCTCGCCAGTCGGTTAGGGGACAGTATGCTGGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGATGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGTAGATGCTCCATCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTACAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAACGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTCTGTGTGTTCTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGTTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGACGATGAGTATCATGCTTACCTTATTATTAGCTTGGAGGCTCGAACTATGGTACTAGAAACTGCTGATCTTCTTAGTGAGGTTACTGAAAGTGTGGACTATTATGTTCAAGGAAAAACACTTGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGACGTAAGCTTTGGAGCTTCTAACTCAGAATCTGGTTCTGCATCTGAGAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATTTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCCGAGCCTTGGCTGAGGAAAACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGGCTATTGATGGCACTGATGGTGCTGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATATCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACTAAAAGATTCTAAACAAGGGGATCGAGATGGAGTGGTCAACCAAGGGAGGAAGGATAATATACCGAATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATGGTACTTCTAAAGTTGAGGATTCCGCATCAGCTGGAGGATCCATTGGCCTTAGTAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCATATCCCAGGGAGGATACCTCAAATGGATCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATCAGGGATTCTTCCTATCAGGGTCAAGACCAGCATGGGTTATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGATCTATTGTTGCTTTTACCGTCCTTCACAACGTGAACTGCAATCATGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGTCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACACCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTCCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATTTCAACCATCAAAATGAGAGTCAGAATATGAATCCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTTTACTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTCTTGTTCTCTTTGGGGAAAATTACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGACGCACCGCCATTACATGTTGTGAGCTTAAACATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGTTCTCTCGATTGTTTTGCGACGGAATTTTTGATTGATGGAAGTACTCTTAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGCTATCCACTTCGGATAGAGCTGGTTCAGTTCCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCACCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTACCCCATGTTGCTGGCCTGAACCCCAGAGCTTTCAGATTATTTCGGTCAAATGGAAAGGCCCATCGGCCAGGCCCTGACAGTATAGTTGATTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTAACCAGATTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGCGATCTGTCTCTTGGAACAAGCTTCTTGTGA 4350 0.4329 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPDDLDAAEWSSRPRHHVGPLPNLVVTAANVLEVYAVRLQEDQQPKDASDDSRRGTLLDGIAGASLELECHYRLHGNVETMAVLSIGGGDVSRKRDSIILTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKIDPQGRCGGVLIYDLQMIILKATQVGSGLVGDDDAFGSSGAVAARIESSYMINLRDLDMRHVKDFTFVYGYIEPVMVILHERELTWAGRVSWTHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVIGANTIHYHSQSASCALALNNYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLMLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMMSSNLKEEVGDIEVDAPSKRLRRSPSDALQDMVSGEELSLYGSATNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDVSFGASNSESGSASESAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGEAIDGTDGAAQDHGDIYCVVCFDNGNLEIFDIPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDRDGVVNQGRKDNIPNMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDGTSKVEDSASAGGSIGLSSTNVSRLRNLRFVRVPLDAYPREDTSNGSPCQQITIFKNIGSYQGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDFNHQNESQNMNPDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLLNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKITDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGSVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRLFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIANQIGTTRSQILSNLSDLSLGTSFL* 1450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g1261 1449 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1440 - -
Gso9g1261 1449 Pfam CPSF A subunit region 1082 1414 IPR004871 GO:0003676|GO:0005634
Gso9g1261 1449 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 129 693 IPR018846 -
Gso9g1261 1449 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1440 - -
Gso9g1261 1449 Gene3D - 53 446 IPR015943 GO:0005515
Gso9g1261 1449 Gene3D - 971 1356 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g1261 Gso-Chr9 36083229 36105032 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g1261 K14401 - gmx:100801803 2853.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1631 16 36978804 36999606 Gso9g1261 9 36083229 36105032 GST