Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1631 ATGAGTTTTGCGGCGTACAAGATGATGCAGTGCCCCACCGGCATCGACAACTGCGCCGCCGGGTTCCTCACCCACTCCCGCTCTGACTTCGTCCCTCTCCAGCCCGACGACCTCGACGCCGAGTGGCCCTCCCGCCCCCGCCACCACGTCGGCTCCCTCCCCAACCTCGTCGTCACCGCCGCCAACGTCCTCGAAGTCTACGCCGTCCGCCTCCAGGAGGACCAGCCGCCCAAGGCCGCCGCCGACTCCCGCCGCGGCGCCCTCCTCGACGGCATTGCCGGGGCCTCCCTCGAACTCGTGTGCCACTACAGGTTGCATGGTAATGTTGAAACCATGGCTGTTTTGAGCATTGGAGGTGGTGATGTTTCTAGGAGGAGAGATTCTATCATGTTAACTTTTGCAGATGCAAAGATTTCAGTTCTTGAGTATGATGATTCTATTCACGGACTTCGTACTAGTTCTTTGCATTGTTTTGAGGGTCCTGAATGGCTTCATCTGAAAAGAGGAAGAGAACAATTTGCAAGAGGACCAGTGGTAAAGGTTGATCCTCAAGGCAGGTGTGGTGGAGTTCTTATCTATGATTTGCAAATGATAATACTAAAGGCTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGCCTTGGGATCTTCAGGAGCAGTTGCTGCTCGTATTGAGTCATCTTATATGATAAACCTACGTGACTTGGATATGAGGCATGTAAAAGATTTTACGTTTGTTCATGGCTATATTGAACCTGTAATGGTGATTTTGCATGAACGTGAACTCACTTGGGCCGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCAGCTGTTAATCTTCCCCATGATGCGTACAAGCTTCTTGCAGTGCCCTCGCCAATAGGTGGTGTTCTTGTAATTAGTGCTAACACTATTCATTATCACAGTCAGTCTGCTTCTTGTGCATTGGCCTTGAACAGTTATGCTGTTACACTTGACAGTAGTCAAGAGATACCAAGATCAAGTTTCAATGTGGAGCTTGATGCTGCCAATGCAACTTGGTTGTTAAGTGATGTGGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACGCTTGTTTATGATGGAAGGGTTGTACAGAGACTTGATCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACAACAATTGGAAATTCTCTGTTTTTCCTCGCCAGTCGGTTAGGGGACAGTATGCTAGTGCAATTTTCTTGTGGATCAGGTGTTTCCATGTTGTCATCCAATCTAAAAGAAGAGGTTGGTGATATTGAAGCAGATGCTCCATCAAAGAGATTGCGAAGGTCTCCTTCTGATGCTTTGCAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGGTCTGCTCCAAATAGAACAGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTAAGAATAAATGCTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAAAATGGTTCTCTTTGTGTTTTGCGGCAATCAATTCGCCCAGAAGTGATTACTGAGGTTGAACTTCCTGGTTGCAAAGGAATTTGGACTGTGTATCATAAGAGCACACGCTCTCATAATGCTGATTCTTCTAAGATGGCTGATGACGATGATGAGTATCATGCTTACCTTATTATTAGTTTGGAGGCTCGTACTATGGTACTAGAAACTGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTGGACTACTATGTTCAAGGAAAAACACTTGCTGCGGGGAATTTATTTGGAAGGTGTCGAGTTATCCAAGTCTATGAACGTGGTGCTCGAATTCTAGATGGTTCTTTTATGACCCAAGATGTAAGCTTTGGAGCTTCTAATTTGGAATCTGGTTCTGCATCTGACAGTGCTATAGCACTTTCTGTTTCTATAGCTGATCCATTTGTCTTGCTCAGGATGAGTGATGGAAGTATTCGACTTCTGATTGGAGATCCTAGTACCTGCACTATCTCTGTCACTTCTCCAGCTTCATTTGAGAGCTCCAAGGGATCAGTTTCTTCATGTACACTGTACCATGATAAAGGACCTGAGCCTTGGCTGAGGAAAACTAGTACTGATGCATGGCTTTCTACTGGTGTTGGTGAGACTATTGATGGCACTGATGGTGCAGCTCAGGATCATGGGGATATTTATTGTGTTGTTTGTTTTGATAATGGTAACCTTGAAATATTTGATGTCCCCAATTTCAATTGTGTCTTTTCTGTGGAAAATTTTATGTCTGGAAAGAGCCATCTTGTTGATGCTCTGATGAAAGAGGTACTGAAAGATTCTAAACAAGGGGATAGAGATGGAGTGATCAACCAAGGGAGGAAGGAAAATATACCGGATATGAAGGTTGTAGAGTTGGCCATGCAGAGATGGTCTGGGCAGCATAGCCGTCCATTTCTTTTTGGGATTTTGAGTGATGGAACTATTCTTTGTTACCATGCTTACCTTTATGAAAGTCCAGATAGTACTTCTAAAGTTGAGGATTCAGCATCAGCCGGAGGATCCATTGGCCTTAGCAGTACCAATGTTTCCAGGCTTAGAAATTTGAGATTTGTTCGTGTGCCTTTGGATGCATATGCCAGGGAGGATACATCAAATGGACCACCTTGTCAACAAATTACTATTTTCAAGAATATTGGTAGTTATGAAGGATTCTTCCTATCAGGGTCAAGACCAGCTTGGGTTATGGTGTTGAGGGAACGACTTCGTGTTCATCCACAGCTATGTGATGGGTCTATTGTTGCTTTTACTGTCCTTCACAACGTGAACTGCAATCAAGGACTTATATATGTTACATCACAGGGTGTTTTGAAGATATGCCAGTTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAAAAAATTCCACTAAAAGCCACACCACACCAAGTAACATACTTTGCGGAGAAGAACTTATATCCACTTATTGTCTCATTTCCTGTTCTTAAGCCACTAAATCAAGTTATTTCTCTGGTTGACCAAGATATCAACCATCAAAATGAGAGTCAGAATATGAATCCTGATGAGCAAAACCGCTTTTATCCTATTGATGAATTTGAGGTTCGTATTATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACTAAGGCAACAATACCTATGCAAAGTTCTGAAAATGCCCTTACTGTGAGGATGGTTACTTTAGTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTATTGTTCTCTTTGGGGAAAAATACTGATAATCCACAAACTCTGGTTTCAGAGGTGTACTCTAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCTCTTCAAGGCCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCACAAGTGGAATGGCACTGAGTTGAATGGTATTGCATTTTTTGATGCACCACCATTACATGTTGTGAGCTTAAATATTGTAAAGAACTTCATCCTTATTGGCGATATCCATAAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAATTGAGCTTATTAGCCAAGGATTTTGGCTCTCTCAATTGTTTTGCGACAGAATTCTTGATTGATGGAAGTACTCTCAGTCTCATGGTTTCAGATGATAATAGAAACATCCAGATTTTTTACTATGCCCCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCAAGAGCTGAATTTCATGTTGGTGCCCATGTGACTAAATTCTTAAGGTTGCAAATGTTATCCACTTCGGATCGAGCTGGTGCTGTACCAGGCTCAGATAAAACCAATCGTTTTGCCTTATTATTTGGTACCTTGGATGGAAGTATTGGTTGCATTGCGCCTCTTGATGAAATCACATTTCGCAGACTGCAGTCTTTGCAGAGAAAACTTGTTGATGCTGTACCCCATGTCGCTGGCCTGAACCCCAGAGCTTTTAGACTATTTCGGTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGATTGTGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGGTTGGAACAACTCGATCACAAATTCTGTCAAATCTAAGTGATCTGTCTCTTGGAACAAGCTTCTTGTGA 4344 0.433 MSFAAYKMMQCPTGIDNCAAGFLTHSRSDFVPLQPDDLDAEWPSRPRHHVGSLPNLVVTAANVLEVYAVRLQEDQPPKAAADSRRGALLDGIAGASLELVCHYRLHGNVETMAVLSIGGGDVSRRRDSIMLTFADAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLIYDLQMIILKATQAGSGLVGEDDALGSSGAVAARIESSYMINLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDAYKLLAVPSPIGGVLVISANTIHYHSQSASCALALNSYAVTLDSSQEIPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLVYDGRVVQRLDLSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSGVSMLSSNLKEEVGDIEADAPSKRLRRSPSDALQDMVSGEELSLYGSAPNRTESAQKSFSFAVRDSLINVGPLKDFSYGLRINADANATGIAKQSNYELVCCSGHGKNGSLCVLRQSIRPEVITEVELPGCKGIWTVYHKSTRSHNADSSKMADDDDEYHAYLIISLEARTMVLETADLLSEVTESVDYYVQGKTLAAGNLFGRCRVIQVYERGARILDGSFMTQDVSFGASNLESGSASDSAIALSVSIADPFVLLRMSDGSIRLLIGDPSTCTISVTSPASFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVGETIDGTDGAAQDHGDIYCVVCFDNGNLEIFDVPNFNCVFSVENFMSGKSHLVDALMKEVLKDSKQGDRDGVINQGRKENIPDMKVVELAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPDSTSKVEDSASAGGSIGLSSTNVSRLRNLRFVRVPLDAYAREDTSNGPPCQQITIFKNIGSYEGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNVNCNQGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVISLVDQDINHQNESQNMNPDEQNRFYPIDEFEVRIMEPEKSGGPWQTKATIPMQSSENALTVRMVTLVNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKNTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWNGTELNGIAFFDAPPLHVVSLNIVKNFILIGDIHKSIYFLSWKEQGAQLSLLAKDFGSLNCFATEFLIDGSTLSLMVSDDNRNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRAGAVPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPRAFRLFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQVGTTRSQILSNLSDLSLGTSFL* 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1631 1447 Pfam CPSF A subunit region 1080 1412 IPR004871 GO:0003676|GO:0005634
Gso16g1631 1447 Gene3D - 51 444 IPR015943 GO:0005515
Gso16g1631 1447 Gene3D - 969 1354 IPR015943 GO:0005515
Gso16g1631 1447 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 128 687 IPR018846 -
Gso16g1631 1447 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1 2 1438 - -
Gso16g1631 1447 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 2 1438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1631 Gso-Chr16 36978804 36999606 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1631 K14401 - gmx:100785543 2865.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1631 16 36978804 36999606 Gso16g1631 16 36978804 36999606 ECH
Gso16g1631 16 36978804 36999606 Gso9g1261 9 36083229 36105032 GST