Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0687 ATGGCTTCAATGTCCCTCTCACTTTCTTGTTCCATTCTTCCATCTCCCATTCTCCACACCAAACCCAAACCCAACACCAACCTCACAACCCTCGTCTCAGTTTCAGCGTCGAAAACCTCTGTCTCTGCATCTTCTACCCGAAAACCCGCTCCGGCACCGAAGCCCCCGAAAGTAAGAGAATTTCCCCAAACATTGTTTTTTGAGAATCTGGAAAAGACACGAATTAAGAAGAAGAAAAAGATGAAGGAGGAAACGAAGAGTGGTAAGGCTTGGGTCCACTCTCTCCCCGAAGTCTTATCCTATCGAATTCACAAGAGGCACTGGAGCATAGCCCTTGAGTTATTTGACATGCTTAGAGAGCAACCCTATTACCAACCAAGGGAAGATACTTACATGAAACTCATTGTGTTGCTTGGAAAATCCAGTCAACCGCTTCGTGCCCATGAGCTGTTTAACTCTATACACGAAGATGGTTGTGGAAGTACTGAACTTTACACAGCCTTAATTGCAGCATTTTGCCAGAACAACCTGGTTGATGAGGCGTTGTCAATTCTTGATGAGATGATGAACCTCCCCAGTTGCCAGCCTGATATTTTCACTTACAGTACCTTGATAAAAGCTCTTGTGGATTCTTTAAAATTTGAAATGGTAGAGTTGCTGTTTGATAAAATGGCTAAAAGATCTATTGTGCCAAACACTTACACCCAGAACCTCATCCTGAGTGGTTATGGTAAGGCTGGGAGGTTTGATCAGATGGAGAAAATAGTGTCAAGTATGATGGAGGGCACTACTTGCAAGCCTGATGTTTGGACAATGAACACAGTCATCAGTGTCTTTGGTGATAAGGGTCAGATTGATATAATGGAGAAATGGTATGACAAATTTTGTAGTTTTGGGATACAACCTCAAAGGAGCACGTTTAATATTTTAATTGCAGCTTATGGTAGTAAAAGAATGTATGACAAAATGTCATCAGTTATGCAGTGTATGCGCAGGGTAAAATGTCCATGGACAACCTCAACTTATAACAACGTGATTGAGGCATTTGCGGCTGTTGGTGATGCTGAAAACATGGAACGTGCATTTGATCAAATGTATGCTGAGGGTTTGAAAGCAGATACTAAGACTTTCTGCTTTCTTATTAATGGCTATGCTAATGCAGGTATCTTCCATAAAGTAATCAGCAGTGTTAGTTTGGCTGAGAAGCTTCAGATATGTGTGAATACATCCTTTTACAATGCAATCATATCTGCATGTGCAAAGGAAGATGCTTTGACGGAAATGGAAAGATTTTTCAAGCATATGAAAGAAAAAGAATGTCATCCAGATAACACAACATACTCTGTCATGATTGAAGCATACAGAAAAGAAGGTATGAATGACAAAATACACTATTTGGAGCAGGAAAAACGGATGATGATGTCTGATGACAAAAAATTGAATGAGACTGAGGACTGA 1458 0.4067 MASMSLSLSCSILPSPILHTKPKPNTNLTTLVSVSASKTSVSASSTRKPAPAPKPPKVREFPQTLFFENLEKTRIKKKKKMKEETKSGKAWVHSLPEVLSYRIHKRHWSIALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHELFNSIHEDGCGSTELYTALIAAFCQNNLVDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEMVELLFDKMAKRSIVPNTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWTMNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRRVKCPWTTSTYNNVIEAFAAVGDAENMERAFDQMYAEGLKADTKTFCFLINGYANAGIFHKVISSVSLAEKLQICVNTSFYNAIISACAKEDALTEMERFFKHMKEKECHPDNTTYSVMIEAYRKEGMNDKIHYLEQEKRMMMSDDKKLNETED* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0687 485 Gene3D Tetratricopeptide repeat domain 67 225 IPR011990 GO:0005515
Gso9g0687 485 Gene3D Tetratricopeptide repeat domain 253 350 IPR011990 GO:0005515
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Gso9g0687 485 PANTHER ATPASE EXPRESSION PROTEIN 3 1 477 - -
Gso9g0687 485 PANTHER OS03G0309800 PROTEIN 1 477 - -
Gso9g0687 485 Gene3D Tetratricopeptide repeat domain 353 484 IPR011990 GO:0005515
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 341 373 IPR002885 -
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 164 197 IPR002885 -
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 306 338 IPR002885 -
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 199 233 IPR002885 -
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 412 443 IPR002885 -
Gso9g0687 485 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Gso9g0687 485 Pfam PPR repeat 237 261 IPR002885 -
Gso9g0687 485 Pfam PPR repeat 130 159 IPR002885 -
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 191 IPR002885 -
Gso9g0687 485 Pfam PPR repeat family 339 386 IPR002885 -
Gso9g0687 485 Pfam PPR repeat family 408 454 IPR002885 -
Gso9g0687 485 Pfam PPR repeat family 267 314 IPR002885 -
Gso9g0687 485 Pfam PPR repeat family 164 209 IPR002885 -
Gso9g0687 485 MobiDBLite consensus disorder prediction 39 58 - -
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 267 IPR002885 -
Gso9g0687 485 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0687 Gso-Chr9 9558265 9561577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0687 144 464 Miscellaneous Gene Families AT4G11690 20.672 2.22e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0687 - - gmx:100776657 916.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0326 17 2939279 2941511 Gso9g0687 9 9558265 9561577 PCT
Gso9g0687 9 9558265 9561577 Gso17g0326 17 2939279 2941511 PCT