Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0326 ATGGCTTCCATGTCTTTGTCTTTTTGTTCTTGCATCGTCCCCTCTCGAATTCCCCACGACAAATCCAACAAAACCCACAGCCATCATCAGCCTACTTTCCCTCTCATTCGCTTTGGCATTTCAGCTCCCGCCGTCAAAAAGCGACACTGGAAAAAAGGGGAGTTTCCTGCTACTTCCCAACCATCCTTCCCCAACGACACTAGGAGGAAGACCCCTCTTAAGAACCTCAAGAAGAAATTCGACAAAAAGAACGATGCCAAGGCATGGGTCAACACTGTCACCGAATCCTTATCCGAACGCATCCACAACAAACACTGGCTTCAGGCCCTCCAGGTATTTGATATGCTTAGAGAGCAAACCTTTTACCAACCCAAAGAAGGGACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCATCAGCTTTTTACCACAATGATTGAAGAAGGTTTAGAACCTACTCCTGAACTGTACACAGCGTTGCTCGCTGCGTATTGCAGGAGCAACATGATTGATGAGGCGTTTTCAGTTCTTAATGAGATGAAGAAGCTTCCTCGTTGCCAGCCTGATGTTTTCACTTACAGTACCTTGATCAAAGTTTGTGTCGATGCTTTCAAATTTGATTTGGTTGAGTTGCTGTATGAAGAAATGGCTGAAAGGTCTATCATGCCAAACACAGTCACTCAGAACATTGTTTTGGGTGGTTATGGCAAGGCGGGCATGTTTGATCAGATGGAGAAAGTACTGTCCAGCATGCTGCTGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACACAATCATCAGTGTTTTTGGTAACATGGGTCAGATTGATATGATGGAAAAATGGTATGAAAAATTCCGTTATTTTGGGATAGAACCAGAGACGCGCACTTTTAATATTTTGATCGGTGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAATTTCCATGGACGACCTCTACTTACAACAATGTGATTGAGGCATTTGCAGATGCAGGTGATGCGAAGCACATGGAATGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTATGCTGCCTTATCAATGGTTATGCAAATGCTGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCTGGAAAGCTCGAGATACCTGAGAATATCACCTTTTATAATGCGGTCTTATCTGCGTGTGCAAAGGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAGCCAGTGTCAGCCAGATGACACAACATACACGATCATGATCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCAGGAAAAGCAGACGATGATGACTGATGATAAAAAAGTTAGCCAGTTTGAGAATGAAATCTTGATTTGA 1467 0.4288 MASMSLSFCSCIVPSRIPHDKSNKTHSHHQPTFPLIRFGISAPAVKKRHWKKGEFPATSQPSFPNDTRRKTPLKNLKKKFDKKNDAKAWVNTVTESLSERIHNKHWLQALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSIMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLINGYANAGLFHKVISSVRLAGKLEIPENITFYNAVLSACAKAEDLMEMERVFKRMKDSQCQPDDTTYTIMIEAYRKEGMNDKIYYLEQEKQTMMTDDKKVSQFENEILI* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0326 488 Pfam PPR repeat 339 368 IPR002885 -
Gso17g0326 488 Pfam PPR repeat 128 157 IPR002885 -
Gso17g0326 488 Pfam PPR repeat 236 259 IPR002885 -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Gso17g0326 488 PANTHER ATPASE EXPRESSION PROTEIN 3 30 478 - -
Gso17g0326 488 Gene3D Tetratricopeptide repeat domain 260 332 IPR011990 GO:0005515
Gso17g0326 488 Gene3D Tetratricopeptide repeat domain 400 473 IPR011990 GO:0005515
Gso17g0326 488 Gene3D Tetratricopeptide repeat domain 333 399 IPR011990 GO:0005515
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 231 266 IPR002885 -
Gso17g0326 488 Gene3D Tetratricopeptide repeat domain 87 259 IPR011990 GO:0005515
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Gso17g0326 488 Pfam PPR repeat family 407 453 IPR002885 -
Gso17g0326 488 Pfam PPR repeat family 266 313 IPR002885 -
Gso17g0326 488 Pfam PPR repeat family 164 207 IPR002885 -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 163 197 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 305 333 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 128 160 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 411 442 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 233 268 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 340 372 IPR002885 -
Gso17g0326 488 TIGRFAM PPR: pentatricopeptide repeat domain 198 232 IPR002885 -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 160 190 IPR002885 -
Gso17g0326 488 PANTHER OS03G0309800 PROTEIN 30 478 - -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 125 159 IPR002885 -
Gso17g0326 488 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0326 Gso-Chr17 2939279 2941511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0326 123 468 Glycosyltransferase AT1G05670 23.864 1.38e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0326 - - gmx:100786610 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0326 17 2939279 2941511 Gso17g0326 17 2939279 2941511 ECH
Gso17g0326 17 2939279 2941511 Gso9g0687 9 9558265 9561577 PCT
Gso9g0687 9 9558265 9561577 Gso17g0326 17 2939279 2941511 PCT