Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0534 ATGGAGACTCCTCCTCCCCAACAAGGCGTCGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAACCAAAGGACGAACACGGGAAGGGTTTGAAGGAAGGTAGGAAAACACAACAACAACAACAACAACAACAACAACATCATCATCAGCAGCAGCAACAGCAACAAGATCAACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCAGGTGGGGCCCCCAGCTTGAACAAGCCACTTACAAGAATCGCCAGAGACTCTACCTTTCTGAGCAGACTGATGGTAGTGTGCCGAATACTCTGGTGATTGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCTGCTGCTGAGCACATTTCGCAGTTTAATGAAGAGGCGCGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGTGAGGTAAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTCCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACCGGACACCAAGATAATGCGGAATTTGCTCTTGCTATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCTACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGACAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGTATCTATTGTGGGCATGAGGATACTGTTGAAGATGTGGCTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCCCATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGGTCACCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGTTCAGCTGAAGATGGTCTCTTAAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTTCAACATGCAGGTCATAGGGATAAAGTTGTTGACTTCCATTGGAATGCATATGATCCATGGACGATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACGTTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTGGAGAAATTCAAATCTCATGTTGTGGCGTGTGCTTCAAAGACTGAAAAATGA 1542 0.4598 METPPPQQGVVKKKETRGRKPKPKDEHGKGLKEGRKTQQQQQQQQQHHHQQQQQQQDQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVAFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0534 513 MobiDBLite consensus disorder prediction 1 62 - -
Gso9g0534 513 SMART WD40_4 376 416 IPR001680 GO:0005515
Gso9g0534 513 SMART WD40_4 282 322 IPR001680 GO:0005515
Gso9g0534 513 SMART WD40_4 205 245 IPR001680 GO:0005515
Gso9g0534 513 SMART WD40_4 327 367 IPR001680 GO:0005515
Gso9g0534 513 SMART WD40_4 434 481 IPR001680 GO:0005515
Gso9g0534 513 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 63 129 IPR022052 -
Gso9g0534 513 MobiDBLite consensus disorder prediction 255 282 - -
Gso9g0534 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 367 IPR001680 GO:0005515
Gso9g0534 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 418 IPR001680 GO:0005515
Gso9g0534 513 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 34 510 - -
Gso9g0534 513 SUPERFAMILY WD40 repeat-like 150 504 IPR036322 GO:0005515
Gso9g0534 513 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Gso9g0534 513 Pfam WD domain, G-beta repeat 335 367 IPR001680 GO:0005515
Gso9g0534 513 Pfam WD domain, G-beta repeat 287 322 IPR001680 GO:0005515
Gso9g0534 513 Pfam WD domain, G-beta repeat 377 416 IPR001680 GO:0005515
Gso9g0534 513 Gene3D - 36 499 IPR015943 GO:0005515
Gso9g0534 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 289 331 IPR001680 GO:0005515
Gso9g0534 513 PANTHER WD40 REPEAT FAMILY 34 510 - -
Gso9g0534 513 MobiDBLite consensus disorder prediction 19 34 - -
Gso9g0534 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 367 - -
Gso9g0534 513 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 383 418 - -
Gso9g0534 513 MobiDBLite consensus disorder prediction 255 275 - -
Gso9g0534 513 MobiDBLite consensus disorder prediction 35 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0534 Gso-Chr9 5969765 5977394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0534 291 476 Miscellaneous Gene Families AT5G08390 25.389 1.57e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0534 K10752 - gmx:100779302 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1394 15 15259042 15266817 Gso9g0534 9 5969765 5977394 GST