Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1394 ATGGAGACTCCTCCTCCGCAACAAGGCGTGGTGAAGAAGAAGGAGACAAGGGGCCGAAAACCCAAGCCGAAAGACGAACACGCCAAGGCGTTGAAGGAAGGGAGAAAAACACAGCAACAACAACATGATCAGCAGCAACAACAACAACAGCAACATCAACCTTCGGTGGACGAGAAATACACGCAGTGGAAGTCCCTTGTTCCTGTCCTCTACGACTGGCTCGCCAACCACAACCTCGTCTGGCCCTCTCTCTCTTGCCGGTGGGGCCCTCAGCTTGAACAAGCCACTTACAAGAATCGTCAAAGACTCTACCTTTCTGAGCAGACTGATGGTAGCGTGCCGAATACTCTGGTGATTGCAAATTGCGAGGTTGTGAAGCCTAGGGTTGCAGCTGCAGAACACATTTCGCAGTTTAATGAAGAGGCACGGTCCCCATTTGTGAAGAAGTACAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTGCCACAAAATTCCAAGATAGTGGCTACACATACAGACAGCCCTGATGTCCTTGTTTGGGATGTTGAAAGTCAACCTAATCGCCATGCTGTTCTTGGAGCTACAAACTCTCGTCCTGATTTGATATTGACTGGACACCAAGATAATGCAGAATTTGCTCTTGCAATGTGCCCAACTGAACCCTATGTTCTTTCAGGAGGAAAGGACAAAACAGTGGTGTTGTGGAGTATTGAAGACCATATAACATCTGCTGCCACAGACTCCAAATCTGGTGGGTCAATTATCAAACAAAACTCTAAATCTGGAGAAGGCAATGATAAAACTGCTGATGGCCCTACTGTTGGACCACGAGGCATTTATTGTGGGCATGAGGATACAGTTGAAGATGTGACTTTCTGCCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGCTCTAGCCCTGTGGTTAAGGTTGAGAAAGCTCATAATGCTGATCTTCACTGTGTGGACTGGAATCCACATGATGATAATCTGATTCTTACCGGGTCAGCAGACAATTCTGTTCGCATGTTTGATCGCCGCAATCTCACCACTAATGGAGTTGGATCACCCATCCACAAGTTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCAGTATTCGGAAGTTCAGCTGAAGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGAAAAAAGATAGAGCGAACTGGAAAATCAATAAGTTCTCCTCCAGGGTTGTTTTTCCAACATGCAGGTCATAGGGATAAAGTAGTTGACTTCCATTGGAATGCATATGATCCATGGACCATTGTTAGTGTGTCTGATGACTGTGAAAGTACTGGAGGAGGGGGAACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGATGAGGTTTTGGCCGAGCTTGAGAAATTCAAATCTCATGTGGTGGCGTGTGCTTCAAAGACTGAAAAATGA 1527 0.461 METPPPQQGVVKKKETRGRKPKPKDEHAKALKEGRKTQQQQHDQQQQQQQQHQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATDSKSGGSIIKQNSKSGEGNDKTADGPTVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERTGKSISSPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVACASKTEK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1394 508 MobiDBLite consensus disorder prediction 1 57 - -
Gso15g1394 508 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 32 505 - -
Gso15g1394 508 MobiDBLite consensus disorder prediction 19 39 - -
Gso15g1394 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 362 IPR001680 GO:0005515
Gso15g1394 508 SUPERFAMILY WD40 repeat-like 145 497 IPR036322 GO:0005515
Gso15g1394 508 Coils Coil 28 48 - -
Gso15g1394 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 326 IPR001680 GO:0005515
Gso15g1394 508 SMART WD40_4 322 362 IPR001680 GO:0005515
Gso15g1394 508 SMART WD40_4 200 240 IPR001680 GO:0005515
Gso15g1394 508 SMART WD40_4 429 476 IPR001680 GO:0005515
Gso15g1394 508 SMART WD40_4 277 317 IPR001680 GO:0005515
Gso15g1394 508 SMART WD40_4 371 411 IPR001680 GO:0005515
Gso15g1394 508 Pfam WD domain, G-beta repeat 330 362 IPR001680 GO:0005515
Gso15g1394 508 Pfam WD domain, G-beta repeat 205 240 IPR001680 GO:0005515
Gso15g1394 508 Pfam WD domain, G-beta repeat 282 317 IPR001680 GO:0005515
Gso15g1394 508 Pfam WD domain, G-beta repeat 372 411 IPR001680 GO:0005515
Gso15g1394 508 MobiDBLite consensus disorder prediction 250 270 - -
Gso15g1394 508 MobiDBLite consensus disorder prediction 40 57 - -
Gso15g1394 508 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 58 124 IPR022052 -
Gso15g1394 508 ProSiteProfiles Trp-Asp (WD) repeats profile. 378 413 IPR001680 GO:0005515
Gso15g1394 508 PANTHER WD40 REPEAT FAMILY 32 505 - -
Gso15g1394 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 362 - -
Gso15g1394 508 Gene3D - 32 494 IPR015943 GO:0005515
Gso15g1394 508 MobiDBLite consensus disorder prediction 250 277 - -
Gso15g1394 508 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 378 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1394 Gso-Chr15 15259042 15266817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1394 286 471 Miscellaneous Gene Families AT5G08390 25.907 4.74e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1394 K10752 - gmx:100781408 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1394 15 15259042 15266817 Gso9g0534 9 5969765 5977394 GST