Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso9g0475 | ATGGAGGGTACCCTTTTCCCCAATAGGCCAGTCTTACCTGTTCCTTCACACAAACCAACACAACCACCTTTGAAATTCAAGCCAACTTTTTTACCTCCACAATCTCCACCACCATCACCACCTCCTTCTTTTCAGTTAGATTCCCTTCTCCAACACCTTCAGCATCTCTCTTCAGTTCCAATCACCACTCACACCCTCACAATTGTGCCTCCTTCTCTTGACAACACAAAAAATTTTAACAAGTCAGTTAATTCAAAGCACCCCACTTTAGGTTCTGACCCCATCATTGATGAGGACCAGTTTGATGATGCAAAGTTTCGATTTTTATCTGACAAGGGTAAGTTGCTGCTCAATTCAGTTGTTGGATCACCTTTGCATGAACTGAATGACTTTTTCAACTCTGTTAAGTTTGAGTTGCTTGAGGCTGATTTTCCCAGCTTGTTGAAGGCTTTGGACCTTTCTGGGAACTGGGAAAGGGCACTCTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGATCAGAATTTGAGGTTGGACAACCAGGTAGTTGAATTGATGGTTAGGATACTGGGGAGGGAGTCACAACATTCAATTGCATCCAAGTTGTTTGATTTAATTCCTGTCGAAAAATACTCCCTTGATGTCCGGGCTTACACAACCATTCTCCATGCGTATGCTCGCTCCGGGAAGTATAAACGGGCTATTGACTTGTTTGATAAGATGGAGGGGATTGGTCTTGATCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTACGGCAAGATGGGTCGATCTTGGGGTAGAATCTTGGAGTTGTTGGATGAGATGAGAAGTAAAGGGCTTGAATTTGATGAGTTTACTTGCAGCACTGTGATTTCTGCTTGTGGGAGAGAGGGTATGCTGGATGAAGCAAGGAAGTTTTTGGCTGAATTGAAATTGAATGGCTATAAACCAGGAACCGTTATGTATAATTCTATGCTGCAGGTTTTTGGAAAGGCTGGAATTTACACCGAGGCCTTGAGCATCTTGAAAGAAATGGAGGATAATAATTGCCCTCCTGATTCTATTACTTACAATGAGCTCGCGGCAACTTATGTAAGGGCTGGGTTTCTCGACGAAGGGATGGCTGTCATAGATACAATGACAAGCAAAGGGGTTATGCCAAATGCAATTACTTATACCACTGTAATCGATGCCTATGGTAAGGCAGGAAGGGAGGATGACGCATTAAGGTTGTTCAGCAAGATGAAGGACTTGGGTTGTGCTCCCAATGTATACACTTACAACTCTGTTCTTGCCATGCTAGGCAAGAAGTCAAGAACGGAAGATGTTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGCGCTACGTGGAACACCATGCTTGCTGTATGTAGTGAGGAGGGTAAGCACAATTATGTTAACAAGGTCTTGAGGGAAATGAAAAACTGTGGATTTGAGCCTGACAAAGACACATTCAATACATTGATTAGTTCATATGCTCGGTGCGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGGTTAAATCAGGCTTTACTCCATGTGTAACAACTTATAATGCTCTTCTAAATGCCCTGGCTCATCGAGGTGATTGGAAAGCAGCAGAATCTGTCATTCAGGACATGCAGACCAAGGGCTTTAAGCCCAACGAAACTTCGTACTCACTGTTGCTCCATTGTTATTCCAAGGCTGGGAATGTCAGGGGGATAGAGAAGGTTGAGAAAGAAATTTATGATGGTCAGGTCTTTCCTAGCTGGATACTTTTGAGAACCCTTGTCCTATCAAACCACAAGTGCAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAACTTCAAAAGTATGGATACAAACCGGATTTGGTTGTCATTAATTCCATGCTTTCGATGTTTTCCCGAAACAAGATGTTTTCGAAGGCCCGTGAAATGCTGCATTTCATTCACGAATGTGGATTGCAGCCAAATCTTTTCACCTACAATTGCTTGATGGATCTGTATGTCCGAGAGGATGAGTGTTGGAAAGCAGAAGAAGTGCTCAAGGGAATTCAAAACTCCGTACCGGAGCCAGATGTTGTGTCTTACAATACTGTTATCAAGGGATTCTGCAGAAAAGGGCTCATGCAGGAAGCTATTAGAGTTCTCTCAGAAATGACCACTAAGGGGATTCAACCAACTATAGTTACATACAATACTTTCTTGTCAGGCTATGCAGGGATGGAGTTGTTTGATGAAGCAAATGAAGTCATTAGATTTATGATTGAGCACAATTGCAGGCCAAGTGAACTAACTTACAAGATTCTAGTTGATGGTTATTGTAAAGCAGGGAAGCATGAAGAAGCCATGGACTTTGTGACTAAGATTAAGGAGATTGATATCTCTTTTGATGATAAATCTGTGAAAAGACTAGGTTCTTGTATTAGGGAGAAAGTGGGATCTACTTTGTGA | 2493 | 0.422 | MEGTLFPNRPVLPVPSHKPTQPPLKFKPTFLPPQSPPPSPPPSFQLDSLLQHLQHLSSVPITTHTLTIVPPSLDNTKNFNKSVNSKHPTLGSDPIIDEDQFDDAKFRFLSDKGKLLLNSVVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDMQTKGFKPNETSYSLLLHCYSKAGNVRGIEKVEKEIYDGQVFPSWILLRTLVLSNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDKSVKRLGSCIREKVGSTL* | 831 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 741 | 775 | IPR002885 | - | |
| Gso9g0475 | 830 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 265 | 366 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 120 | 264 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 367 | 479 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 250 | 285 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 636 | 670 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat | 288 | 317 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat | 772 | 802 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 461 | 495 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat family | 705 | 753 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat family | 530 | 578 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat family | 320 | 361 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat family | 460 | 509 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | PPR repeat family | 635 | 681 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 356 | 390 | IPR002885 | - | |
| Gso9g0475 | 830 | MobiDBLite | consensus disorder prediction | 12 | 42 | - | - | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 603 | 700 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 391 | 425 | IPR002885 | - | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 701 | 829 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | Gene3D | Tetratricopeptide repeat domain | 480 | 602 | IPR011990 | GO:0005515 | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 531 | 565 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 743 | 777 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 499 | 530 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 464 | 496 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 358 | 392 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 638 | 671 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 288 | 321 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 393 | 427 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 428 | 461 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 708 | 741 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 534 | 567 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 779 | 804 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 323 | 357 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 252 | 286 | IPR002885 | - | |
| Gso9g0475 | 830 | TIGRFAM | PPR: pentatricopeptide repeat domain | 218 | 243 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 215 | 249 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 776 | 810 | IPR002885 | - | |
| Gso9g0475 | 830 | PANTHER | OS03G0856100 PROTEIN | 1 | 824 | - | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 706 | 740 | IPR002885 | - | |
| Gso9g0475 | 830 | PANTHER | - | 1 | 824 | - | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 286 | 320 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | Pentatricopeptide repeat domain | 214 | 264 | IPR002885 | - | |
| Gso9g0475 | 830 | Pfam | Pentatricopeptide repeat domain | 379 | 439 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 496 | 530 | IPR002885 | - | |
| Gso9g0475 | 830 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 426 | 460 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso9g0475 | Gso-Chr9 | 4958305 | 4961223 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso9g0475 | 161 | 811 | Glycosyltransferase | AT1G05670 | 22.239 | 4.14e-46 | 175 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso9g0475 | K17710 | - | gmx:100806053 | 1639.01 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso15g1332 | 15 | 13931443 | 13934346 | Gso9g0475 | 9 | 4958305 | 4961223 | GST |