Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1332 ATGGAGGGTACCCTTTTCCCCAATAGGCCAGTTTTGCCTGCTCCTTCACACAAACCAACACAACAACCTTTGAAATTCAAGCCAACTTTTTTGCCTCCACAGTCTCCACCACCACCACCTCCTTCTTTTCAGTTAGATTCCCTTCTCCAACACCTTCAGCATCTCTCTTCAGTTCCCATCACCACTCACACTCTCACACTTGTGCCTCCTTCTCATGATAACACCAAAGATTTTAATAATTCAGTTCATTCAAAGCACCCCACTTTAGGTTCTGGCTCCATAATTGATGAGGACAAGTTTGATGATGCAAAGTTTGGATTTTTATCAGACAAGGGTAAGTTGCTGTTCAGTTCAATTGTTGGGTCACCTTTGCATGAATTGAATGACTTTTTCAACTCTGTTAAGTTTGAGTTGCTTGAGGCTGATTTTCCCAGCTTGTTGAAGGCTTTGGACCTTTCTGGGAACTGGGAAAGGGCACTCTTGCTGTTTGAATGGGGTTGGTTGCATTTTGGGAGTGATCAGAATTTGAGGTTGGACAACCAGGTTGTTGAATTGATGGTTAGGATATTGGGGAGGGAGTCACAGCATTCAATTGCATCCAAGTTGTTTGATTTAATTCCTGTGGAAAAATACTCGCTTGATGTCCGGGCTTACACCACCATTCTTCATTCCTATGCTCGCACTGGCAAGTACAAACGGGCTATTGACTTGTTTGGGAAGATGAAGGAGATTGGTCTTGATCCAACTTTGGTCACTTACAATGTTATGCTTGATGTTTACGGCAAGATGGGTCGTTCTTGGGATAGAATCTTGGAGTTGTTGGATGAGATGAGGAGTAAAGGGCTTGAGTTAGATGAGTTTACCTGCAGCACTGTGATTTCTGCTTGTGGGAGAGAGGGTATGCTGGATGAAGCGAGGAAGTTTTTGGCTGAATTGAAATTTAATGGCTATAAACCGGGAACTGTTACGTATAATTCTATGTTGCAGGTTTTTGGAAAGGCAGGAATTTACACTGAGGCCTTGAGCATATTGAAAGAAATGGAGGATAATAATTGCCCTCCTGATTCTGTTACTTACAATGAGCTTGCGGCAACATATGTAAGAGCTGGTTTTCTGGACGAAGGGATGGCTGTCATAGATACAATGACAAGCAAAGGGGTAATGCCAAATGCTATTACCTATACCACTGTAATAGATGCCTATGGTAAGGCGGGAAGGGAGGATGATGCATTAAGGTTGTTCAGCCTGATGAAGGACTTGGGTTGTGCTCCCAATGTGTACACATATAACTCTGTTCTTGCCATGCTAGGCAAGAAATCAAGAACAGAAGATGTTATTAAGGTTCTCTGTGAGATGAAATTGAATGGATGTGCTCCTAATCGTGCTACATGGAACACCATGCTTGCTGTATGTAGCGAGGAGGGTAAGCACAATTATGTTAACAAGGTCTTGAGGGAAATGAAAAACTGTGGATTTGAGCCTGATAAAGACACATTCAATACATTGATTAGTGCATATGCTCGTTGCGGATCTGAAGTTGATTCTGCAAAAATGTATGGGGAAATGGTTAAATCAGGCTTTACTCCATGTGTAACAACTTATAATGCTCTTCTAAATGCCCTGGCTCGGCGAGGTGATTGGAAAGCGGCAGAATCTGTCATTCAGGACATGCGAACCAAGGGCTTTAAGCCTAATGAAAATTCATACTCACTGTTGCTCCATTGTTATTCCAAGGCTGGGAATGTCAAGGGGATAGAGAAGGTCGAGAAAGAAATTTATGATGGTCATGTCTTTCCTAGCTGGATACTTTTGAGAACCCTTGTCCTTACAAACCACAAGTGCAGACACCTTAGGGGAATGGAAAGGGCATTTGATCAACTGCAAAAGTATGGATACAAACCTGATTTGGTTGTCATCAACTCCATGCTTTCGATGTTTGCCCGAAACAAGATGTTTTCGAAGGCCCGTGAAATGCTGCATTTCATTCATGAATGTGGATTGCAGCCAAATCTTTTCACCTACAATTGCTTGATGGATTTGTATGTCCGAGAGGGCGAGTGTTGGAAAGCAGAAGAAGTGCTCAAGGGAATTCAAAACTCTGGTCCAGAGCCAGATGTTGTGTCTTACAATACTGTTATCAAGGGATTTTGCAGAAAAGGGCTCATGCAGGAGGCTATTGGAGTTCTCTCAGAAATGACCACTAAGGGGATTCAACCAACTATAGTTACATACAATACTTTCTTGTCAGGCTATGCAGGGATGGAGTTGTTTGATGAAGCAAATGAAGTCATTAGATTTATGATTGAGCACAATTGCAGGCCAAGTGAACTAACTTACAAGATTCTAGTTGATGGTTACTGTAAAGCTGGGAAGTATGAAGAAGCCATGGACTTTGTGTCTAAGATTAAGGAGCTTGATATCTCCTTTGATGATCAATCTGTGAAAAGACTTGGTTCTTGTATTAGGGAGAGAGTGGGGTCTACTTTGTGA 2490 0.4221 MEGTLFPNRPVLPAPSHKPTQQPLKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVPITTHTLTLVPPSHDNTKDFNNSVHSKHPTLGSGSIIDEDKFDDAKFGFLSDKGKLLFSSIVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAIDLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGMLDEARKFLAELKFNGYKPGTVTYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQDMRTKGFKPNENSYSLLLHCYSKAGNVKGIEKVEKEIYDGHVFPSWILLRTLVLTNHKCRHLRGMERAFDQLQKYGYKPDLVVINSMLSMFARNKMFSKAREMLHFIHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDDQSVKRLGSCIRERVGSTL* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1332 829 MobiDBLite consensus disorder prediction 1 42 - -
Gso15g1332 829 Pfam PPR repeat 287 316 IPR002885 -
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 265 371 IPR011990 GO:0005515
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 601 724 IPR011990 GO:0005515
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 121 264 IPR011990 GO:0005515
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 284 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 635 669 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 740 774 IPR002885 -
Gso15g1332 829 Pfam Pentatricopeptide repeat domain 213 263 IPR002885 -
Gso15g1332 829 Pfam Pentatricopeptide repeat domain 378 438 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 495 529 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Gso15g1332 829 PANTHER - 1 823 - -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 670 704 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 530 564 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 251 286 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 533 566 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 498 529 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 672 706 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 778 810 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 322 356 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 637 670 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 707 740 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 357 391 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 463 495 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 742 776 IPR002885 -
Gso15g1332 829 TIGRFAM PPR: pentatricopeptide repeat domain 217 247 IPR002885 -
Gso15g1332 829 Pfam PPR repeat family 634 680 IPR002885 -
Gso15g1332 829 Pfam PPR repeat family 459 508 IPR002885 -
Gso15g1332 829 Pfam PPR repeat family 529 577 IPR002885 -
Gso15g1332 829 Pfam PPR repeat family 319 360 IPR002885 -
Gso15g1332 829 Pfam PPR repeat family 704 752 IPR002885 -
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 733 809 IPR011990 GO:0005515
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 511 594 IPR011990 GO:0005515
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 775 809 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 705 739 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Gso15g1332 829 Pfam PPR repeat 771 801 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Gso15g1332 829 PANTHER OS03G0856100 PROTEIN 1 823 - -
Gso15g1332 829 Gene3D Tetratricopeptide repeat domain 372 491 IPR011990 GO:0005515
Gso15g1332 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1332 Gso-Chr15 13931443 13934346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1332 160 804 Glycosyltransferase AT1G05670 23.375 2.09e-52 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1332 K17710 - gmx:100803889 1637.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1332 15 13931443 13934346 Gso9g0475 9 4958305 4961223 GST