Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0449 ATGGCAGCACCATTGGCATGTGTTGTTGGGAGTGGTTTATCCATACAGAGTAATAAAATTGGCAAGGACGTCAATGGAAGATATCTCTTCTCATATCATAGGCTTTCAGTACTGAGTAAGGAGTCAAAGACAATATGCATAAAGGCTTCCTTGGATCAAAGGAAGCATGAAGGTAGAAGAGGATTTCTGAAATTGTTGAATGTGGGAGTTGGCTTACCTGTATTATTAGGAGGTGGGAAAGCTTATGCTGATGAACAAGGACCTTCCTCCTCCAGAATGTCTTATTCTAGATTTCTTGAGTATTTGGATAAGGGTAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACCACGGCTGTTGTGGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTGCGTGTTCAACTTCCTGGACTTAGCCAAGAGCTTCTTCAGAAATTCAGGGAAAAGAACATTGATTTTGCAGCTCATAATGGCCAAGAAGAGACAGGTTCTCCATTAGCTAACCTGATTGGGAACCTGGCTTTCCCTCTGATTTTGATTGGAGGATTGTTCCTTCTCTCGAGACGATCGTCAGGAGGGATGGGAGGTCCCGGTGGGGGCTTTCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAGCCCAATACTGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTGAAGAAGCCTGAGAGATTCACTGCTGTTGGGGCTCGCATACCAAAAGGTGTTCTTCTTGTTGGCCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTATTCAGGAAGGCCAAAGAGAATGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGCGGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTGCTATGAGAACACCTGGTTTTAGTGGAGCAGATCTGGCAAACCTGCTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGACGGCAATTTCTTCCAAAGAGATCGATGATTCTATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTGATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACCTTAGTTCCTCGCGGGCAAGCTCGTGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCTGATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTAGGTGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGTCTGAGGTTACAACTGGAGCAGTCGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCGTGGACTCATCAGCTCAAAGTGATGTTATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTCAAGAGACTCTCAGATGAAGCATATGAAATTGCGTTGAGCCAAATAAGGAGCAACCGCGAGGCGATTGACAAGATTGTGGAAGTTCTATTGGAGACTGAGACAATGTCTGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCTGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGCTGTTTGA 2067 0.4403 MAAPLACVVGSGLSIQSNKIGKDVNGRYLFSYHRLSVLSKESKTICIKASLDQRKHEGRRGFLKLLNVGVGLPVLLGGGKAYADEQGPSSSRMSYSRFLEYLDKGRVKKVDLFENGTTAVVEAVSPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNGQEETGSPLANLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRVDILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGESEVTTGAVGDLQQITSLAKQMVTTFGMSDIGPWSLVDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQIRSNREAIDKIVEVLLETETMSGDEFRALLSEFVEIPAENRVPPSTPSPVAV* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0449 688 Gene3D - 214 396 IPR027417 -
Gso9g0449 688 Gene3D - 87 167 - -
Gso9g0449 688 ProSitePatterns AAA-protein family signature. 366 384 IPR003960 GO:0005524|GO:0016887
Gso9g0449 688 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 466 IPR027417 -
Gso9g0449 688 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 6 678 - -
Gso9g0449 688 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 27 677 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso9g0449 688 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 174 666 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso9g0449 688 SMART AAA_5 259 398 IPR003593 -
Gso9g0449 688 CDD AAA 238 395 - -
Gso9g0449 688 Gene3D - 397 472 - -
Gso9g0449 688 Gene3D Peptidase M41 473 671 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso9g0449 688 SUPERFAMILY FtsH protease domain-like 478 673 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso9g0449 688 Pfam Peptidase family M41 477 664 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso9g0449 688 PANTHER METALLOPROTEASE M41 FTSH 6 678 - -
Gso9g0449 688 Pfam ATPase family associated with various cellular activities (AAA) 263 394 IPR003959 GO:0005524|GO:0016887
Gso9g0449 688 Pfam AAA+ lid domain 418 461 IPR041569 -
Gso9g0449 688 Pfam FtsH Extracellular 80 158 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0449 Gso-Chr9 4536208 4540239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0449 217 666 Miscellaneous Gene Families AT5G53170 50.773 6.47e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0449 K03798 - gmx:100800550 1261.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1307 15 13462956 13466916 Gso9g0449 9 4536208 4540239 GST