Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g1307 ATGGCAGCACCATTGGCATGTCTTGTTGGGAGTGGTTTATCTATACAGAGTAATAAATTAACTCTTGGCAAGGACGTCAATGGAAGATATCTCTTCTCATATCATAGGCTTTCAGCACAGAGTAAGGAGTCAAAGACAATATGCATAAAGGCATCCTTGGATCAAAGGAAGCATGAAGGGAGAAGAGGATTTCTGAAATTGTTGAATGTGGGAGTTGGCTTACCTGTATTATTAGGAGGTGGGAAAGCGTATGCTGATGAACAAGGACCTTCCTCCTCCAGAATGTCTTATTCCAGATTTCTTGAGTATTTGGATAAGGGTAGAGTTAAAAAAGTGGATCTGTTTGAGAATGGAACCTCGGCTGTTGTGGAGGCTGTTTCTCCTGAGTTGGGTAATAGGGTGCAGCGAGTGCGTGTTCAATTTCCTGGACTTAGCCAAGAGCTCCTTCAGAAATTCAGGGAAAAGAACATTGACTTTGCCGCTCATAATGGCCAAGAAGAGACAGGTTCTCCATTAGCTAACCTGATTGGGAACCTGGCTTTTCCTCTGATTTTGATTGGAGGATTGTTCCTTCTCTCGAGACGATCATCAGGAGGGATGGGAGGTCCCGGTGGGGGCTTTCCTCTTGCTTTTGGTCAATCTAAAGCCAAGTTTCAAATGGAGCCCAATACTGGAGTGACATTTGATGATGTTGCTGGAGTGGATGAAGCCAAGCAGGATTTTATGGAGGTGGTGGAATTTCTTAAGAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCAAAAGGTGTTCTTCTTGTTGGTCCTCCTGGAACTGGGAAGACACTTTTAGCAAAGGCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAATCTCAGGTTCTGAGTTTGTAGAGATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGCGATTTATTCAGGAAGGCCAAAGAGAATGCCCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTGGTGGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAGGTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTGCTATGAGAACACCTGGTTTTAGTGGAGCAGATCTGGCAAACCTGCTGAACGAAGCTGCTATATTAGCTGGTCGTCGTGGAAAGACAGCAATTTCTTCCAAAGAGATTGATGATTCCATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTAATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGCGGAACTTTGACTCCTGGTCATGATCCTGTACAAAAAGTAACCTTAGTTCCTCGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTGCTGATGACCCAACTCTTATCTCTAAACAACAACTCTTTGCAAGAATTGTTGGTGGACTTGGGGGCAGAGCAGCAGAGGAAGTTATTTTTGGTGAGCCTGAGGTTACAACTGGAGCAGCTGGTGATTTGCAGCAAATAACCAGTTTGGCCAAGCAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTCATGGACTCATCAGCTCAAAGTGATGTTATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATGCTGCTGTCAAGAGACTCTCAGATGAAGCATATGAAATAGCATTGAGCCAAATAAGGAGCAACCGTGAGGCAATTGACAAAATTGTGGAAGTTCTATTGGAGAAGGAGACAATGTCTGGAGATGAATTCCGAGCTCTCCTGTCCGAGTTTGTTGAAATTCCTGCTGAAAATCGGGTCCCTCCTTCAACTCCCTCACCAGTTGTTGTTTGA 2073 0.4404 MAAPLACLVGSGLSIQSNKLTLGKDVNGRYLFSYHRLSAQSKESKTICIKASLDQRKHEGRRGFLKLLNVGVGLPVLLGGGKAYADEQGPSSSRMSYSRFLEYLDKGRVKKVDLFENGTSAVVEAVSPELGNRVQRVRVQFPGLSQELLQKFREKNIDFAAHNGQEETGSPLANLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAVGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFRKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRVDILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFEADVSLEVIAMRTPGFSGADLANLLNEAAILAGRRGKTAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPADDPTLISKQQLFARIVGGLGGRAAEEVIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDAAVKRLSDEAYEIALSQIRSNREAIDKIVEVLLEKETMSGDEFRALLSEFVEIPAENRVPPSTPSPVVV* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g1307 690 Pfam ATPase family associated with various cellular activities (AAA) 265 396 IPR003959 GO:0005524|GO:0016887
Gso15g1307 690 CDD AAA 240 397 - -
Gso15g1307 690 Gene3D - 216 398 IPR027417 -
Gso15g1307 690 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Gso15g1307 690 PANTHER METALLOPROTEASE M41 FTSH 4 680 - -
Gso15g1307 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 468 IPR027417 -
Gso15g1307 690 Gene3D - 89 169 - -
Gso15g1307 690 Pfam FtsH Extracellular 82 160 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Gso15g1307 690 Gene3D Peptidase M41 475 673 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso15g1307 690 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 680 - -
Gso15g1307 690 SUPERFAMILY FtsH protease domain-like 480 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso15g1307 690 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 29 679 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso15g1307 690 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 668 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso15g1307 690 Gene3D - 399 474 - -
Gso15g1307 690 Pfam AAA+ lid domain 420 463 IPR041569 -
Gso15g1307 690 Pfam Peptidase family M41 479 666 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso15g1307 690 SMART AAA_5 261 400 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g1307 Gso-Chr15 13462956 13466916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso15g1307 219 668 Miscellaneous Gene Families AT5G53170 50.773 4.44e-138 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g1307 K03798 - gmx:100795567 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1307 15 13462956 13466916 Gso9g0449 9 4536208 4540239 GST