Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0355 ATGCATGCATGGAGAGCAGCATGCAAGTCCAATGTGCAAGCCAGGCTTCTGATCCCTAAGGGAAGATTCGTCGTTTCCACGATGTTTTTCGCAGGACCGTGTTTGACTCCAGGGCCTATTACAATCCAAGTTGTAGGCACTGTTGCGGCTACAACAGACATCAGTGAGTATGCGAATGGTGAATGGCTCATGTTTGAGGAACTGGATGGTATAAAGCTTATCGGTGGTGGTACTTTTGATGGCATGGGTAAGGGATCATGGGCAACTGCTGAGAACTGTGAAGCAGATGAATCCAACAATTGCGTCAGAAACCCTAGTAGTATTTATTTCCACAATGTGAGGAATGGAATTATACAGAACATCAAATCCGTAGACCCCAAAGGCTTTCATCTTTTTGTCACTAGCTGTGCTAACATCAGACTCCGATTACTTAAGCTCACTGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATTAGCAACTCCATCGATGTAAAATTATCCAAAAATATCATTGAAACTGGAGATGATTGTGTTTCCATGATACAAGGAGTCAACAATGTTACTATCAACAAACTGAAATGTGGCCCTGGACACGGTATCAGTATTGGAAGTCTTGGAAAGTATCCGGAAGAGCAAGAAGTGAAAGACATTCGTGTCAAGAACTGCACGATGGTTGGCACAACGAATGGCCTCAGAATCAAGACATGGCCTGATAAGTATCCAGGTGCTGCATCAGATATCACCTTCGGTGACATTGTCATGGACAAGGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGCGAACCGGCAAACTGCAAAAAGAAGCCTTCACTTGTAAATATAAAAGATGTTGTTTTTTCAAACATAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGATATTAAACTTCAGAACATAGACCTGAACCTTGGACCCAAGCCTTCCGGTTCTAGATGTGCCAATATAAAACCAATCTATACGGGTGTTCAAAGGCCAGCAGCTTGCCTATAA 1056 0.4309 MHAWRAACKSNVQARLLIPKGRFVVSTMFFAGPCLTPGPITIQVVGTVAATTDISEYANGEWLMFEELDGIKLIGGGTFDGMGKGSWATAENCEADESNNCVRNPSSIYFHNVRNGIIQNIKSVDPKGFHLFVTSCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNIIETGDDCVSMIQGVNNVTINKLKCGPGHGISIGSLGKYPEEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGAASDITFGDIVMDKVKNPIIIDQEYECEPANCKKKPSLVNIKDVVFSNIRGTTISPIAVDLRCSKQFPCQDIKLQNIDLNLGPKPSGSRCANIKPIYTGVQRPAACL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0355 351 SUPERFAMILY Pectin lyase-like 2 351 IPR011050 -
Gso9g0355 351 Pfam Glycosyl hydrolases family 28 8 338 IPR000743 GO:0004650|GO:0005975
Gso9g0355 351 ProSitePatterns Polygalacturonase active site. 193 206 IPR000743 GO:0004650|GO:0005975
Gso9g0355 351 Gene3D - 1 346 IPR012334 -
Gso9g0355 351 PANTHER POLYGALACTURONASE 1 350 - -
Gso9g0355 351 PANTHER - 1 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0355 Gso-Chr9 3462327 3465171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso9g0355 3 350 Glycoside Hydrolase AT4G18180 44.262 3.77e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0355 K01213 - gmx:100782722 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2073 7 44640085 44641994 Gso9g0355 9 3462327 3465171 PCT
Gso9g0355 9 3462327 3465171 Gso7g2073 7 44640085 44641994 PCT