Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2073 ATGGCCATTGCAAAGAGTGCTTCCATTCTTATTATTTTGTGCTTTGCATTGGCCTGCAATGCGGATAATGCTGGAAAACCAGACCCAGTTGCTGGTCCTGACATGTTCAGCAATAAAAATGTGGCTAAGGATGTGCTCCTTCCCGGGGAGCAAATAGTTAACGTCCAGGATTTTGGAGCCAAAGGTGATGGCAAGTTCGACTGCACCGAGTCTTTCATGCAAGCATGGGCAAAGACCTGCCATCAATCCTCTGGGCCAGCCAGGCTTTACGTTCCTGATGGCAGATTCGTGGTTTCATCAATGTATTTTAATGGGCCATGCAATGCTACAAGTATAACAATTCAAGTACAAGGGACTGTTTTGGCTACCACGGATATTTCCGAATATGAAAACGGCGACTGGCTCTTTTTCCAGAACCACAATGGCTTGAAAATTGTTGGCGGGGGCACTTTCGATGGCCAGGGTAAAGATTCATGGCAATACGCCCAGAATTGCGAGTCAGCCAATGACGGTTCATGCGCCAGGAATCCAAGCAACCTTTATTTCAGCGGAAACAGCAACTTGGTTGTACAGAATATCAGATCAGTGAATCCCAAAGGCTTTCACATATTCGTTACAAAATGTACAAACGTCAGGTTGAGAAAACTTAAGCTGGTTGCACCGGGAACCAGCCCCAATACTGATGGCATTCATGTCAGCCACTCTGACACTGTGATAATGTCCAGAAATACCATTGCAACTGGGGATGACTGTGTCTCTCTGATACCAGGACTCAGAAACATTTTCATCAACAAACTCAAGTGTGGCCCTGGACATGGTATCAGTATCGGTAGCCTTGGGAAGTATGCAGATGAGGGAGACGTGAGAGGCGTTCGTATCAAGAACTGCTCATTGACTGGCACAACCAATGGCCTTAGAATCAAGGCATGGCCAGAGAGGTATCCAGGTGCAGCGTCAGATGTAAGCTTCAGTGACATTATCATGAAAGATGTCAAAAATCCTATCATCATTGACCAAGAGTATGAATGTTATCCAGACTGCAAAAAGAAGCCGTCACTTGTAAAGCTCCAAAATATTCATTTCTCAAATATAAGGGGAACTACAATTTCACCACTTGCAGTGGACTTGAGGTGCAGCGGGCTATTCCCATGCCAAGGTGTTACAATTCGAGACATTGACCTCAAGATTGGACTCACCCCAACCACCTCAAGATGTGTCAATACTCGACCTCTCTTTGGAGGCTTGCTAATGCCCCCTGCATGCGCATAG 1269 0.4594 MAIAKSASILIILCFALACNADNAGKPDPVAGPDMFSNKNVAKDVLLPGEQIVNVQDFGAKGDGKFDCTESFMQAWAKTCHQSSGPARLYVPDGRFVVSSMYFNGPCNATSITIQVQGTVLATTDISEYENGDWLFFQNHNGLKIVGGGTFDGQGKDSWQYAQNCESANDGSCARNPSNLYFSGNSNLVVQNIRSVNPKGFHIFVTKCTNVRLRKLKLVAPGTSPNTDGIHVSHSDTVIMSRNTIATGDDCVSLIPGLRNIFINKLKCGPGHGISIGSLGKYADEGDVRGVRIKNCSLTGTTNGLRIKAWPERYPGAASDVSFSDIIMKDVKNPIIIDQEYECYPDCKKKPSLVKLQNIHFSNIRGTTISPLAVDLRCSGLFPCQGVTIRDIDLKIGLTPTTSRCVNTRPLFGGLLMPPACA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2073 422 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Gso7g2073 422 PANTHER POLYGALACTURONASE 2 422 - -
Gso7g2073 422 ProSitePatterns Polygalacturonase active site. 265 278 IPR000743 GO:0004650|GO:0005975
Gso7g2073 422 Gene3D - 47 411 IPR012334 -
Gso7g2073 422 PANTHER - 2 422 - -
Gso7g2073 422 SMART pbh1 318 339 IPR006626 -
Gso7g2073 422 SMART pbh1 185 205 IPR006626 -
Gso7g2073 422 SMART pbh1 235 278 IPR006626 -
Gso7g2073 422 SMART pbh1 288 309 IPR006626 -
Gso7g2073 422 SMART pbh1 208 234 IPR006626 -
Gso7g2073 422 SUPERFAMILY Pectin lyase-like 49 421 IPR011050 -
Gso7g2073 422 Pfam Glycosyl hydrolases family 28 84 408 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2073 Gso-Chr7 44640085 44641994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2073 52 421 Glycoside Hydrolase AT4G18180 44.588 2.15e-106 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2073 K01213 - gmx:100800324 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2073 7 44640085 44641994 Gso9g0355 9 3462327 3465171 PCT
Gso9g0355 9 3462327 3465171 Gso7g2073 7 44640085 44641994 PCT