Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso9g0342 ATGGGTGTTTTTACTTTCGAGGATGAGACCACCTCTACTGTAGCTCCAGCTAGGCTTTACAAAGCTTTGGTTAAGGATGCTGATAACCTCGTCCCAAAGGCAGTTGAGGCCATCAAGAGTGTTGAAATCGTTGAAGGAAATGGTGGCCCCGGAACCATTAAAAAGCTCACTTTTGTTGAGGATGGGCAAACCAAGTACGTGTTGCACAAAGTTGAAGCAATTGATGAGGCTAATTGGGGATACAACTACAGCGTTGTTGGGGGTGTGGGGTTGCCAGACACAGTGGAGAAGATCTCATTTGAGGCCAAATTGGTTGCAGATCCCAATGGAGGGTCCATTGCAAAAATCACTGTCAAATACCAGACCAAAGGCGATGCTAATCCCAGTGAAGAGGAACTCAAGAGTGGCAAAGCCAAGGGTGATGCTCTTTTCAAGGCACTTGAGGGCTATGTTTTGGCCAATCCTGATTACAACTAA 477 0.4633 MGVFTFEDETTSTVAPARLYKALVKDADNLVPKAVEAIKSVEIVEGNGGPGTIKKLTFVEDGQTKYVLHKVEAIDEANWGYNYSVVGGVGLPDTVEKISFEAKLVADPNGGSIAKITVKYQTKGDANPSEEELKSGKAKGDALFKALEGYVLANPDYN* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso9g0342 158 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 88 120 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 Gene3D - 2 158 IPR023393 -
Gso9g0342 158 SUPERFAMILY Bet v1-like 2 158 - -
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 49 58 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 65 84 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 84 97 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 109 125 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PRINTS Major pollen allergen Bet V1 signature 143 153 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Gso9g0342 158 PANTHER - 1 157 - -
Gso9g0342 158 SMART Bet_v_1_2 5 154 IPR000916 GO:0006952
Gso9g0342 158 PANTHER ABA-RESPONSIVE PROTEIN 1 157 - -
Gso9g0342 158 CDD Bet_v1-like 4 151 - -
Gso9g0342 158 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso9g0342 Gso-Chr9 3310509 3311851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso9g0342 - - gmx:100500525 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g1210 15 12091521 12093350 Gso9g0342 9 3310509 3311851 GST
Gso9g0342 9 3310509 3311851 Gso7g2058 7 44539903 44540831 PCT