Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2789 ATGTCAACGATACAATCTCTAGATACATTAATTTTTTATTTTTTTATTTATTTACAGTCTCCTAACCCTAACCCTAACCCTAACCCTAACCCTTCCTCCTCCTACCCTCCCTTTCACTTCCCCAACTTCGACCTCCCTCTCCCTCCCCACCCCCACCACCGCTCCATCTCCTTCCCCACCCAACCCATCCCTCCCCCTTCCAACCCCAACGCCGGCGCCCGCCTCATGACCCTCCTTGGTAACACCTCCCCCACCCCGCCGCAGCCCCCGCCGCTCGAGTTCGTCCCCTTCTCCTCCTCTGCCGTCCTCGCCGCTGCCTCCGCCGCTTCCGCGGCCCTCACGCGCCTACCCAGCAGTAAGGTCCCCAAGGGAAGACACTTGGCCGGGGAGCTCGTGACTTACGACGTCGACGTGAGTCTGCCCGGCGAGGTCCAGCCCCAGCTCGAGGCGGCTCCGATTACGAAATACGGGTCGGATCCTAACCCGGTTCTGGGGAGGCAGATTGCCGTGAATAAGTCGTATATATGCTATGGCTTGAAACAGGGGAACATTAGGGTGCTTAATATTCACACTGCTGTCAGGTCCTTGCTCAGAGGCCACACTCAGAGGGTCACAGACTTGGCATTCTTTGCTGAAGATGTTCATCTCTTGGCTAGTGTTGGCACAGATGGCCGTGTCTACGTGTGGAAGATCACTGAAGGCCCAGATGATGAAGATAAGCCTCAAATTACTTCCAATATTGTTATTGCTCTTCAAATAGTGGGGGAGGAGAAAGTTGAACATCCTCAAATTTGCTGGCACTGCCACAAACAAGAGATATTGATAGTTGGTATGGGAAAACATGTTTTAAGGATTGATACCACAAAAGTTGGAAATGGTGAAGCCTTTGTGGTAGATGATCCTCTGAGATGTCCTGTGGATAAGCTCATTGATGGGGTTCAGCTGGTAGGCACACATGACGGGGAGGTGACTGATTTGTCGATGTGCCAATGGATGACCAATCGATTGGTATCTGCGTCACAAGATGGCACGATAAAGATCTGGGAAGATCGCAAGACCCAACCACTTGCGATTTTGAGACCACATGATGGGAATCCGGTTTTTTCTGCTACATTTTTTACTGCTCCTCACCAGCCTGATCATATTGTCCTTATCACAGCGGGACCACAAAATCGGGAAGTAAAGCTTTGGGTCTCAGCAAGTGACAAAGGTTGGGTGCTCCCAAGTGACACTGAATCATGGAAATGCACTCAGACATTGGAGTTGAAGAGTTCAGCTCAACCTTCTATGGATGCATTCTTTAATCAAGTTGCAGCATTGTCTCATGCAGCAGGTCTGCTTTTACTTGCAAATGCCCAGAGGAATGCTATATATGCTGTGCATTTAGAATATGGTTCTAATCCAGAATCAACACGCATGGATTATATAGCCGAGTTTACTGTGACCATGCCCATTCTGAGTTTTACTGGGACCAGTGATATATTGCCTCATGGTGAACATATTGTTCAGGTTTATTGTGTTCAAACACAGGCTATTCAGCAGTATGCTTTGGATCTGGCTCAGTGCTTGCCTCCGCCATATGAAAATGTGGGACTAGAGAATTCAGATTCCAGTGTTTCACGCGATCCTATTACTGTTGAAGGATTCCACTCTTTAGATTCTTCTGCAGGTAGAACAACTGAAATGTCTTTAGCCAGTTCTGCTCCCAAAACAATGTTACAAACAAGTAGTAATGAGGGTGGACTTGTGGCACGATACCCTTTAAGCTCTGGCCATGTTGAGGCACCTATTTCTAGAGGAATCAGCAGTTCAAATATTGAAGCTAAACCTGCTACGTTACGGTCGGTTTCCCTCTCACCCAGGCTTATTGCTGGCTCATCACTGGTCAGTTCAGGATTGACAATGAAAGCGATAGTTAAAAAATTTCAGTCAAAATTCAGGAAAGTTAGGGAAGCAATGAGTCGATGGGATAAGCTTCAATCTTGCTTAATTTCTCAGTTTAGGAATGCTTTCCATATTGTTGATAGGTTGCAGGTGCTTCAAAATTCCAACAATTATGGTGTTTTAAATTGTGCCAGTGGCATGAAAGATGCTCTTTTGGTAAAGCAGATTGAATCTTTGAGGAACATCTTGGTTTCCATGCGAAAGACTCTGGAAGAATTTCATTGTATTGTCTTATCTCTTGACAAAATTCACCATGATAGTAGACAACAAGTGAAAGGTGGTTCTTGTATTCTGAACATGAAACAATTGCAGCAACAAATTGGCATCAAACCTAGTCTTATCTATTGCTTGGATAGCCTGATGTTTATACATGAGATATACAACTCTGAGTATTTATTAAAGTCATCAGTGATCTCAGCACTATCAGAAATTGCCTTGAAGCCCAGTGACAGTGATCTTGGTGCACTTCAGCAACTCTTGGTTGATCAACCCAATCTCCAAACTGTGGAAGTTCAATTTGTATTTGATGTGATATTTGCCGAGGAACTGAGTTGA 2499 0.4578 MSTIQSLDTLIFYFFIYLQSPNPNPNPNPNPSSSYPPFHFPNFDLPLPPHPHHRSISFPTQPIPPPSNPNAGARLMTLLGNTSPTPPQPPPLEFVPFSSSAVLAAASAASAALTRLPSSKVPKGRHLAGELVTYDVDVSLPGEVQPQLEAAPITKYGSDPNPVLGRQIAVNKSYICYGLKQGNIRVLNIHTAVRSLLRGHTQRVTDLAFFAEDVHLLASVGTDGRVYVWKITEGPDDEDKPQITSNIVIALQIVGEEKVEHPQICWHCHKQEILIVGMGKHVLRIDTTKVGNGEAFVVDDPLRCPVDKLIDGVQLVGTHDGEVTDLSMCQWMTNRLVSASQDGTIKIWEDRKTQPLAILRPHDGNPVFSATFFTAPHQPDHIVLITAGPQNREVKLWVSASDKGWVLPSDTESWKCTQTLELKSSAQPSMDAFFNQVAALSHAAGLLLLANAQRNAIYAVHLEYGSNPESTRMDYIAEFTVTMPILSFTGTSDILPHGEHIVQVYCVQTQAIQQYALDLAQCLPPPYENVGLENSDSSVSRDPITVEGFHSLDSSAGRTTEMSLASSAPKTMLQTSSNEGGLVARYPLSSGHVEAPISRGISSSNIEAKPATLRSVSLSPRLIAGSSLVSSGLTMKAIVKKFQSKFRKVREAMSRWDKLQSCLISQFRNAFHIVDRLQVLQNSNNYGVLNCASGMKDALLVKQIESLRNILVSMRKTLEEFHCIVLSLDKIHHDSRQQVKGGSCILNMKQLQQQIGIKPSLIYCLDSLMFIHEIYNSEYLLKSSVISALSEIALKPSDSDLGALQQLLVDQPNLQTVEVQFVFDVIFAEELS* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2789 832 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 25 626 IPR045152 GO:0031087
Gso8g2789 832 SUPERFAMILY WD40 repeat-like 163 425 IPR036322 GO:0005515
Gso8g2789 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 316 358 IPR001680 GO:0005515
Gso8g2789 832 PANTHER ENHANCER OF MRNA-DECAPPING-LIKE PROTEIN 25 626 - -
Gso8g2789 832 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 152 463 IPR032401 -
Gso8g2789 832 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 239 IPR001680 GO:0005515
Gso8g2789 832 Pfam Casein Kinase 2 substrate 641 803 IPR029159 -
Gso8g2789 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 197 234 - -
Gso8g2789 832 SMART WD40_4 190 230 IPR001680 GO:0005515
Gso8g2789 832 SMART WD40_4 312 349 IPR001680 GO:0005515
Gso8g2789 832 Gene3D - 150 506 IPR015943 GO:0005515
Gso8g2789 832 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 316 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2789 Gso-Chr8 45643415 45653206 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2789 K12616 - gmx:100797699 1444.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2789 8 45643415 45653206 Gso8g2789 8 45643415 45653206 ECH
Gso18g0617 18 6749870 6759900 Gso8g2789 8 45643415 45653206 GST