Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g2734 ATGTCGGAAAAGGGTCGGCCACTTCCCAAATTTGGTGAATGGGATGTCAATGATCCAGCCTCAGCTGAGGGGTTCACGGTGATTTTTAATAAGGCCAGGGATGAGAAAAAGACAGGTGGCAACCCAGAGTCACCAGGAAAGACTGCTACTGATCCTCATAGCAAACCTGCAGTAGAGCCTGGCAAAACTCAGACTAAAAAATGGTTTTGCTGCATGCAAAACCCTTCTGCCGAATCATAG 240 0.475 MSEKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNPESPGKTATDPHSKPAVEPGKTQTKKWFCCMQNPSAES* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g2734 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Gso8g2734 79 MobiDBLite consensus disorder prediction 31 79 - -
Gso8g2734 79 PANTHER RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED 2 65 - -
Gso8g2734 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 2 65 IPR040387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g2734 Gso-Chr8 45046306 45049328 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g2734 - - gmx:100305826 173.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g2734 8 45046306 45049328 Gso8g2734 8 45046306 45049328 ECH
Gso18g0646 18 7136201 7139411 Gso8g2734 8 45046306 45049328 GST
Gso8g2734 8 45046306 45049328 Gso2g2556 2 49860377 49861756 PCT
Gso2g2556 2 49860377 49861756 Gso8g2734 8 45046306 45049328 PCT