Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0646 ATGTCGGAAAAGGGCCGGCCACTTCCAAAATTTGGTGAATGGGATGTCAATGATCCAACCTCAGCTGAGGGGTTCACAGTGATTTTTAATAAGGCCAGGGATGAGAAAAAGACAGGTGGCAACCCAGATTCACCAGGAAAGACTGCCACTGATCCTCATAGCAAACCTGCAGTAGAGCCTGGCAAAACTCAAACTAAAAAATGGTTTTGCTGCATGCAAAACCCTTCTGCCGAATCATAG 240 0.4625 MSEKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGNPDSPGKTATDPHSKPAVEPGKTQTKKWFCCMQNPSAES* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0646 79 MobiDBLite consensus disorder prediction 31 79 - -
Gso18g0646 79 MobiDBLite consensus disorder prediction 1 20 - -
Gso18g0646 79 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 3 38 IPR008700 -
Gso18g0646 79 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 78 IPR040387 -
Gso18g0646 79 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0646 Gso-Chr18 7136201 7139411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0646 - - gmx:100305772 174.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0646 18 7136201 7139411 Gso8g2734 8 45046306 45049328 GST
Gso18g0646 18 7136201 7139411 Gso2g2556 2 49860377 49861756 PCT
Gso2g2556 2 49860377 49861756 Gso18g0646 18 7136201 7139411 PCT