Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1671 ATGTTCTCCTCCAATGCATACTCCTTCATGTGCAAGCCGGGCATAGGTGGGTGGTCTTCGTGCAGCAACTTGTCTGCTTCACAGAGGAAGCTTTTGGGTTCTTCTTCGAGAATCACGTGTTGTGCTCCAACCAATAGCAAAAGCCACGGCGGCGTTGTCATGGAGAATGAGACAAATGGCTCTTCCACGGTGGACGACTTCGACGTCAACCCCATCCCCAGCGGCGGCGTTCGGGATGTGTACGGCGAGGACAAGGCCACTGAGGATCAGTTTGTGACTCCCTGGAGTATCTCTGTTGCTAGTGGATATTCTTTGTTGAGAGATCCACACTACAACAAAGGACTGGCCTTCACTGAAAAAGAGAGGGATGCTCACTATTTGCGTGGCCTTCTTCCCCCATCAGTTATTTCTCAGGAAACTCAGGTGACGAAAATGATCCGACATATACGCCAGTATGAAGTTCCATTGCACAAGTACATAGCAATGATGGATCTTCAGGAGAGGAATGAAAGGCTGTTTTACAAGCTTCTACTTGATCATGTTGAGGAGTTACTCCCAGTTGTGTATACTCCAACTGTTGGTGAAGCTTGTCAGAAATATGGGAGCATCTTCATGCATCCTCAGGGTCTTTATATAAGTTTGAAGGAGAAAGGGAGGATTCTTGAAGTACTAAGGAATTGGCCTGAGAAGAACATTCAAGTCATTGTTGTAACTGATGGAGAGCGAATTCTGGGTCTTGGGGATCTAGGTTGTCAGGGGATGGGAATACCAGTAGGAAAACTTTCTTTATATTCAGCACTTGGTGGAGTTCGTCCTTCTGCTTGCTTGCCTATTACCATCGATGTGGGTACAAACAATCAGAAGTTGTTGCATGATGAATTATATTTTGGGCTCAGGCATAAACGAGCAACTGGGCAGGAATACACTGAACTTCTGCATGAATTTATGAATGCAGTCAAGCAAAATTATGGTGAAAGAATCCTCGTTCAGTTCGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAATATAGATCAACACATCTTGTCTTTAATGATGATATTCAGGGAACAGCATCAGTGGTCCTTGCAGGAGTAGTTTCTGCTCTAAAATTGGTTGGGGGAGACTTGACTGATCACAGGTTCTTATTCCTTGGTGCTGGAGAGGCTGGCACGGGAATAGCAGAACTCATAGCACTTGAAACATCAAAACGGACAAATGTCCCCCTAGATGAAGTGCGCAAGAACATTTGGTTGGTGGACTCAAAGGGTTTGATTGTGAGTTCCCGTAAAGAATCACTTCAACATTTTAAGAAGCCATGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTGTTAAGGAAATTAAGCCAACGGTGTTAATTGGAACATCAGGACAAGGGAGAACTTTTACTAAAGATGTTATTGAAGCTATGGCTTCCATTAATGAGAAACCAATTATTCTTTCTCTTTCCAACCCAACATCACAGTCGGAATGCACTGCTGAAGAAGCTTATACTTGGAGCCAGGGACGTGCCATTTTTGCTAGTGGGAGCCCATTTGCCCCCGTTGAATATGATGGAAAAGTGTTTGTGCCTGGCCAGGCTAATAATGCATACATTTTTCCTGGATTTGGTCTTGGTTTAATAATGTCTGGGACCATTCGAGTGCACGATGACCTGCTTCTGGCAGCTTCTGAGGCTTTGGCTTCACAGGTGACCCAGAAGGACTATGACAAGGGACTCATATACCCACCATTCAGCAACATCAGAAAGATTTCAGCACGCATTGCTGCCAATGTTGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTAGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGCTCTATGTATACACCACTCTATAGAGGCTACCGGTGA 1926 0.4481 MFSSNAYSFMCKPGIGGWSSCSNLSASQRKLLGSSSRITCCAPTNSKSHGGVVMENETNGSSTVDDFDVNPIPSGGVRDVYGEDKATEDQFVTPWSISVASGYSLLRDPHYNKGLAFTEKERDAHYLRGLLPPSVISQETQVTKMIRHIRQYEVPLHKYIAMMDLQERNERLFYKLLLDHVEELLPVVYTPTVGEACQKYGSIFMHPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYSALGGVRPSACLPITIDVGTNNQKLLHDELYFGLRHKRATGQEYTELLHEFMNAVKQNYGERILVQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGVVSALKLVGGDLTDHRFLFLGAGEAGTGIAELIALETSKRTNVPLDEVRKNIWLVDSKGLIVSSRKESLQHFKKPWAHEHEPVKELVDAVKEIKPTVLIGTSGQGRTFTKDVIEAMASINEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYDGKVFVPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALASQVTQKDYDKGLIYPPFSNIRKISARIAANVAAKAYELGLATSLPQPKDLVKFAESSMYTPLYRGYR* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1671 641 CDD NAD_bind_1_malic_enz 357 635 - -
Gso8g1671 641 PANTHER NADP-DEPENDENT MALIC ENZYME 4, CHLOROPLASTIC 74 641 - -
Gso8g1671 641 PIRSF ME 74 641 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PANTHER MALIC ENZYME-RELATED 74 641 - -
Gso8g1671 641 Gene3D - 100 354 IPR037062 GO:0004471
Gso8g1671 641 ProSitePatterns Malic enzymes signature. 353 369 IPR015884 GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 172 196 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 232 261 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 268 290 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 328 346 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 353 369 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 384 400 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 PRINTS Malic enzyme signature 487 503 IPR001891 GO:0004470|GO:0004471
Gso8g1671 641 Gene3D - 355 641 - -
Gso8g1671 641 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 357 640 IPR036291 -
Gso8g1671 641 SMART Malic_M_2 357 610 IPR012302 GO:0051287
Gso8g1671 641 Pfam Malic enzyme, N-terminal domain 166 347 IPR012301 GO:0004471
Gso8g1671 641 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 79 356 IPR046346 -
Gso8g1671 641 SMART malic_2 166 347 IPR012301 GO:0004471
Gso8g1671 641 Pfam Malic enzyme, NAD binding domain 357 609 IPR012302 GO:0051287
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1671 Gso-Chr8 16358449 16364169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1671 K00029 - gmx:100785718 1271.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0177 15 1499817 1505542 Gso8g1671 8 16358449 16364169 PCT
Gso11g3634 11 52033855 52039569 Gso8g1671 8 16358449 16364169 PCT
Gso8g1671 8 16358449 16364169 Gso15g0177 15 1499817 1505542 PCT
Gso8g1671 8 16358449 16364169 Gso11g3634 11 52033855 52039569 PCT