Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1656 ATGCTTTCCTTCTCTGTTTCTGGTTTCCCTCCATTCCCACTTCGCAGGGCATATCCAAGAAGAGTAAGTGCAAGCTTTGACATTGACACCCCACAAGACCCCAATTCAGTCAACCCTAATGGCTCGAATGCTAAATTTGAAGAAGAAGAAGAAGAATTTCGAAAGGGAAAGGAGAGAGGGAGAGTGATAGGTGGTGGTGGGGTTTTCATTGGAAGGAAGAAGAAGGCGGGGAAGGAGAAAGTTCAATGGGTTTGCTGCAATTGTGGGTACAGTGCAGGGCAATGGTGGGGCATGTGTCGATCATGCAGTGTATCTGGCACTATGAAAGAAGCCAAATTTAGTGATGCTGATACTGTGGTTAGTGGGTTTTCAGTTTTGGAGGATGGTGTTGTGGGGTCTTGGCTACCGCAACAGGAAGGTGAAATGCGCCCCTTGAGATTGACAGAGGTAAACAAGGGACTTGATCATCACCATTGGAGAATTCCTCTGTCTGGTCCATTTGGAGATGAAGTTTCCAGAGTGTTTGGTGGTGGTCTTGTACCAGGCTCATTGACTTTAATTGGTGGTGATCCTGGTGTTGGGAAGAGTACTTTGTTGTTGCAGATAGCTGCAATTATTGCAAAAGGTGACAGTGATGGTGAAGCATGTCCAGTTGTATATGTCTCTGGTGAAGAGAGTGTTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAATCAGATATTTATTTATATTCAAGTAATGATGTTGAGGACATACTGAAGAAAGTACAGTATCTCTCCCCTGGGGCTCTTATTGTTGATTCGATACAAACTGTTTATTTAAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAAGAATGTACTTCAGCTTTACTGCGATTTGCGAAGAAGACAAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATTGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTACTCTTCTCATCGTATGCTTCGAGCTGTGAAAAACCGATTTGGATCTGCTGATGAGCTTGGGGTTTTTGAGATGTCACATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTCAGTGAACAGCTCCTGGATTCAGAAATATTAGCTGGACTAGCTGTTGCTGTAATCATGGATGGGTCCCGGACATTCCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTTAATGGGATCCAACAAAAAAGAGCTGATATGATCATATCTGTTCTTATAAAGCAAGCAGGTCTTCGTCTCCAAGAACATGCTGTATTTTTGAATGTTGTTAGTGGATTGGCACTGACTGAGACTGCAGGAGATCTAGCTATAGCAGCAGCAATTTGCAGCAGTTGCTTGGAAATCCCTATTCCAAATGACATTGCATTCATTGGTGAAATTGGCCTTGGTGGTGAGCTTCGCATGGTTCCTAGAATGGAGAAAAGGGTATATACCGTTGCGAAATTGGGTTACAGAATGTGTATAGTACCCAAGGTGGCTGAAAAAGCTTTGGGAACCGAAGGTTTAGAAAAGATGGAAGTTGTTGGTTGCAGGAATCTGAAAGAGGTTATTAACACTGTATTCCTTAATATAATGAGGAGGTAG 1683 0.429 MLSFSVSGFPPFPLRRAYPRRVSASFDIDTPQDPNSVNPNGSNAKFEEEEEEFRKGKERGRVIGGGGVFIGRKKKAGKEKVQWVCCNCGYSAGQWWGMCRSCSVSGTMKEAKFSDADTVVSGFSVLEDGVVGSWLPQQEGEMRPLRLTEVNKGLDHHHWRIPLSGPFGDEVSRVFGGGLVPGSLTLIGGDPGVGKSTLLLQIAAIIAKGDSDGEACPVVYVSGEESVEQIGNRADRLRIESDIYLYSSNDVEDILKKVQYLSPGALIVDSIQTVYLKGIMGSPGGIMQVKECTSALLRFAKKTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKYSSHRMLRAVKNRFGSADELGVFEMSHSGLQAVSNASEMFLSEQLLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIQQKRADMIISVLIKQAGLRLQEHAVFLNVVSGLALTETAGDLAIAAAICSSCLEIPIPNDIAFIGEIGLGGELRMVPRMEKRVYTVAKLGYRMCIVPKVAEKALGTEGLEKMEVVGCRNLKEVINTVFLNIMRR* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1656 560 ProSiteProfiles RecA family profile 1. 160 313 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Gso8g1656 560 MobiDBLite consensus disorder prediction 26 48 - -
Gso8g1656 560 PANTHER DNA REPAIR PROTEIN RADA 45 554 - -
Gso8g1656 560 SUPERFAMILY Ribosomal protein S5 domain 2-like 350 553 IPR020568 -
Gso8g1656 560 PANTHER DNA REPAIR-LIKE PROTEINRADA 45 554 - -
Gso8g1656 560 SMART AAA_5 181 339 IPR003593 -
Gso8g1656 560 TIGRFAM sms: DNA repair protein RadA 78 546 IPR004504 GO:0003684|GO:0005524|GO:0006281
Gso8g1656 560 PRINTS DNA repair protein radA signature 85 109 - -
Gso8g1656 560 PRINTS DNA repair protein radA signature 173 201 - -
Gso8g1656 560 PRINTS DNA repair protein radA signature 269 293 - -
Gso8g1656 560 PRINTS DNA repair protein radA signature 308 336 - -
Gso8g1656 560 PRINTS DNA repair protein radA signature 343 369 - -
Gso8g1656 560 PRINTS DNA repair protein radA signature 418 441 - -
Gso8g1656 560 MobiDBLite consensus disorder prediction 28 43 - -
Gso8g1656 560 Pfam Subunit ChlI of Mg-chelatase 434 524 - -
Gso8g1656 560 Gene3D - 169 370 IPR027417 -
Gso8g1656 560 Gene3D - 389 559 IPR014721 -
Gso8g1656 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 364 IPR027417 -
Gso8g1656 560 Pfam AAA domain 175 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1656 Gso-Chr8 16212501 16219656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1656 K04485 - gmx:100794165 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0191 15 1636145 1646002 Gso8g1656 8 16212501 16219656 PCT
Gso8g1656 8 16212501 16219656 Gso15g0191 15 1636145 1646002 PCT