Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1635 ATGAGCTCCTTCAAAACATGGTTCAATTTGTTCACCATTTTCTATGTCTTGGCTGCAACTCCAATCTTCTCATTAACAGATTCCTCAAACCAACTCTCCACAAACTTTCTAGAAATTGCCAAGAAACCTGAAGTTTTTGACTGGATGGTGAAAATCAGAAGGAAGATTCATGAGAATCCAGAGTTGGGTTATGAGGAATTTGAGACCAGTAAACTCATTAGAGAGGAATTGGATAAACTGGGTATCCCATATAAATACCCAGTTGCAGTCACCGGTGTTATTGGCTTCATTGGGACAGGAAAGTCACCTTTTGTTGCATTAAGAGCTGATATGGATGCACTTCCCGTCCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCACGCCTGCGGTCATGATGCTCATGTCACTATGCTTCTTGGTGCAGCAAATATTCTCAAACAGCATGAAAAAGAGATACAGGGGACTGTTGTTCTTGTTTTCCAACCAGCCGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGCCTTAGAAAATGTTACTGCTATCTTTGGATTACACGTGGTGCCTCTCATTCCAGTAGGTACAGCGGCCTCTAGGTCCGGTCCATTAACGGCTGGAAGTGGTTTCTTTGAAGCCAAAATAAGTGGAAAGGGAGGTCATGCAGCTATTCCCCAACTTTCTATAGACCCCATATTGGCGGCTTCTAATGTCATTATTAGCCTTCAGCACCTTGTTTCTCGCGAGGCTGATCCTCTAGATCCCCGGGTTGTCACAGTTTCAAAGATTCAAGGAGGTGATGCATTCAATGTTATTCCTGATTATGCCACAATTGGTGGCACCTACCGTGGTTTTACTAATAAAAGCATGGACCAACTTAAATTGCGAATCAAGCAGGTTATCATCGGTCAAGCTGCTGTGCAGAGATGCAATGCAACTGTTAACTTCTTTGAAAATGTGGGACCAGCGAATCCTCCAACTGTGAATAATGGTGACTTGCACAAGCATTTTCAAAATGTTGCTGAGAATGTGCTTGGCGTCAATAATGTTAATCTTAACATGCCACCATTCATGGTAGCTGAAGACTTTGCATTCTATCAAGAGGTCATACCTGGCTACTTCTTCACGCTTGGAATGAAGTATGCTTCACCTAATGAACCGTTTCAGTCATTACACTCACCATATCTCAGAATCAATGAAGATGGACTTCCTTATGGGGCTGCACTTCACGCATCATTAGCTACTAGTTATCTTATAAAACTTCAGCAGTAA 1296 0.4282 MSSFKTWFNLFTIFYVLAATPIFSLTDSSNQLSTNFLEIAKKPEVFDWMVKIRRKIHENPELGYEEFETSKLIREELDKLGIPYKYPVAVTGVIGFIGTGKSPFVALRADMDALPVQEMVEWEHKSKVPGKMHACGHDAHVTMLLGAANILKQHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHVVPLIPVGTAASRSGPLTAGSGFFEAKISGKGGHAAIPQLSIDPILAASNVIISLQHLVSREADPLDPRVVTVSKIQGGDAFNVIPDYATIGGTYRGFTNKSMDQLKLRIKQVIIGQAAVQRCNATVNFFENVGPANPPTVNNGDLHKHFQNVAENVLGVNNVNLNMPPFMVAEDFAFYQEVIPGYFFTLGMKYASPNEPFQSLHSPYLRINEDGLPYGAALHASLATSYLIKLQQ* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1635 431 Gene3D Zn peptidases 49 410 - -
Gso8g1635 431 PANTHER AUXIN CONJUGATE HYDROLASE 1 431 - -
Gso8g1635 431 SUPERFAMILY Bacterial exopeptidase dimerisation domain 215 324 IPR036264 -
Gso8g1635 431 SUPERFAMILY Zn-dependent exopeptidases 44 426 - -
Gso8g1635 431 Gene3D - 214 332 - -
Gso8g1635 431 PIRSF Amidohydrol_AmhX 34 430 IPR017439 GO:0016787
Gso8g1635 431 PANTHER PEPTIDASE M20 FAMILY MEMBER 1 431 IPR017439 GO:0016787
Gso8g1635 431 TIGRFAM amidohydrolases: amidohydrolase 49 413 IPR017439 GO:0016787
Gso8g1635 431 Pfam Peptidase family M20/M25/M40 106 422 IPR002933 GO:0016787
Gso8g1635 431 CDD M20_IAA_Hyd 49 426 IPR044757 GO:0009850|GO:0016787
Gso8g1635 431 Pfam Peptidase dimerisation domain 215 309 IPR011650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1635 Gso-Chr8 15986754 15993096 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1635 K21604 K14664 gmx:100789607 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0198 15 1760842 1764560 Gso8g1635 8 15986754 15993096 PCT
Gso8g1635 8 15986754 15993096 Gso15g0198 15 1760842 1764560 PCT