Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso15g0198 ATGGGTTTTTTCTTCAAATGGGTCAACTTGTTTGTCTTTTTTCATTTCCTTGCTGCAACACCCATCTTCTCAGATTCCTCCTCCAGCTCAAATGCATTCGTCACCACCAAGTTCCTAGATTTAGCCAAGGATCCTCTGGTATTTGATTGGATGATTGGTATCAGGAGGAAGATTCATGAGAATCCAGAACTGGGTTATGAGGAATTTGAGACCAGTAAGCTGATAAGAACTGAATTGGATAAACTGGGCATCTCATATAAATACCCAGTTGCAGTCACTGGTGTTGTTGGCTTCATAGGGACTGGACTCCCTCCTTTTGTTGCATTAAGAGCTGACATGGATGCTCTTCCTCTGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAGTACCTGGAAAGATGCATGCATGCGGTCATGATGCTCATGTTGCCATGCTTCTCGGTGCTGCAAAGATCCTCAAACGGCATGAAAATGAGATACGAGGAACTGTTGTTCTTGTTTTTCAACCAGCAGAAGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGTCTTGGAAAATATCTCTGCCATATTTGGATTGCATATTGTACCTACCTATCCTATTGGTGAAGTGGCCTCAAGGTCGGGTCCCATATTTGCTGGAAGCGGCTTCTTTGAAGCAACAATAAATGGCAGGGGAGGCCATGCAGCTATCCCTCAGCACTCTATAGATCCAATATTGGCTGCTTCCAATGTGATTGTTAGCTTACAGCATATTGTTTCTCGTGAGGTTGATCCTCTGGACTCCCAGGTTGTGACTGTAGGAAAGTTTCAAGGAGGTGGTGCTTTCAATGTTATTCCAGACTCTGTCACAATTGGTGGCACCTTCCGAGCTTTTTCAAAAGAAAGCTTCATGCAACTGAGACAGCGGATTGAGCAGGTTATCACTGGTCAAGCCGCTGTGCAGAGATGCAATGCAACGGTCAACTTTCTTGATGATGAGAAACCTTTCTCCCCCCCTACAGTAAACAACGGGGACTTGCATGGGTACTTTGAAAGTGTTGCTGGGAGTTTGCTTGGCGTGAATAATGTCAAGGAGATGCAACCATTGATGGGATCTGAGGACTTTGCATTCTATCAAGAGGTTTTTCCGGGATACTTCTTCCTCCTTGGAATGGATAATGCCTCTAATGAACATCTTGAATCTCCACACTCTCCATATTTCAAAATCAATGAAGATGCACTTCCTTATGGAGCTGCACTTCATGTATCATTAGCAAGTAGTTATCTTCTCAAATTAAATCCGGACATATCAGTAGTGGGGGGGAAACATCACGATGAATTATAA 1335 0.439 MGFFFKWVNLFVFFHFLAATPIFSDSSSSSNAFVTTKFLDLAKDPLVFDWMIGIRRKIHENPELGYEEFETSKLIRTELDKLGISYKYPVAVTGVVGFIGTGLPPFVALRADMDALPLQEMVEWEHKSKVPGKMHACGHDAHVAMLLGAAKILKRHENEIRGTVVLVFQPAEEGGGGAKKILDAGVLENISAIFGLHIVPTYPIGEVASRSGPIFAGSGFFEATINGRGGHAAIPQHSIDPILAASNVIVSLQHIVSREVDPLDSQVVTVGKFQGGGAFNVIPDSVTIGGTFRAFSKESFMQLRQRIEQVITGQAAVQRCNATVNFLDDEKPFSPPTVNNGDLHGYFESVAGSLLGVNNVKEMQPLMGSEDFAFYQEVFPGYFFLLGMDNASNEHLESPHSPYFKINEDALPYGAALHVSLASSYLLKLNPDISVVGGKHHDEL* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso15g0198 444 CDD M20_IAA_Hyd 51 426 IPR044757 GO:0009850|GO:0016787
Gso15g0198 444 Pfam Peptidase dimerisation domain 217 314 IPR011650 -
Gso15g0198 444 Gene3D Zn peptidases 51 411 - -
Gso15g0198 444 PANTHER AUXIN CONJUGATE HYDROLASE 3 444 - -
Gso15g0198 444 SUPERFAMILY Bacterial exopeptidase dimerisation domain 216 335 IPR036264 -
Gso15g0198 444 TIGRFAM amidohydrolases: amidohydrolase 51 413 IPR017439 GO:0016787
Gso15g0198 444 Pfam Peptidase family M20/M25/M40 108 422 IPR002933 GO:0016787
Gso15g0198 444 SUPERFAMILY Zn-dependent exopeptidases 48 427 - -
Gso15g0198 444 PIRSF Amidohydrol_AmhX 39 430 IPR017439 GO:0016787
Gso15g0198 444 Gene3D - 216 334 - -
Gso15g0198 444 PANTHER PEPTIDASE M20 FAMILY MEMBER 3 444 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso15g0198 Gso-Chr15 1760842 1764560 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso15g0198 K21604 - gmx:100792044 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0198 15 1760842 1764560 Gso8g1635 8 15986754 15993096 PCT
Gso8g1635 8 15986754 15993096 Gso15g0198 15 1760842 1764560 PCT