Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1609 ATGGCTCAGCCGCCGTTCGATCCGTTCTACCTTTACCAACATGATGAGCAGAGCAACATCAACACGCTATTTGTCTCCGGTCTACCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCGTTTGCCACGTTTTTCAACCACCAATCGGCAATGGCAGCGTTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTAGTGGAGCCTACGTGGTTATAGATAAAAGGTCCAAAGGAGAGCCTGATCTTCAGGGATCATCAAGTGAGGACGGTGACAGCGACCCTGATGAACCATCAGACAGTGGCGACAACCAGGGTGATTTAGCAATCATGACAAGTGATGAAACGGCTGTTGGTTCTGACAATGCTGTATCTGTGGAGCAACATGGAAAGGGCAGTACTGGAGGACTGTGTTCCACTCTCTTTATCGCAAATCTTGGTCCAAATTGCACTGAAGATGAATTGAAGCAGGCTTTTTCTGCATATACTGGATTCAACATGGTCAAAATGCGTTCCAGAGGAGGAATGCCTGTTGCATTTGTTGATTTTGAGGAAACTCACCAAGCTGCTAAAGTCATGGAGGAGCTTCAGGGAAGCTTGCTGCCGTCATCAGATCGGGGTGGCATGCATATAGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 795 0.4906 MAQPPFDPFYLYQHDEQSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEPDLQGSSSEDGDSDPDEPSDSGDNQGDLAIMTSDETAVGSDNAVSVEQHGKGSTGGLCSTLFIANLGPNCTEDELKQAFSAYTGFNMVKMRSRGGMPVAFVDFEETHQAAKVMEELQGSLLPSSDRGGMHIEYARSKMRKR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1609 264 CDD RRM_scw1_like 181 258 - -
Gso8g1609 264 Gene3D - 15 103 IPR012677 -
Gso8g1609 264 MobiDBLite consensus disorder prediction 117 151 - -
Gso8g1609 264 SMART rrm1_1 22 93 IPR000504 GO:0003723
Gso8g1609 264 SMART rrm1_1 183 255 IPR000504 GO:0003723
Gso8g1609 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Gso8g1609 264 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 245 IPR000504 GO:0003723
Gso8g1609 264 CDD RRM_RBPMS_like 21 96 - -
Gso8g1609 264 MobiDBLite consensus disorder prediction 130 144 - -
Gso8g1609 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Gso8g1609 264 Gene3D - 180 264 IPR012677 -
Gso8g1609 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 141 262 - -
Gso8g1609 264 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 16 106 - -
Gso8g1609 264 PANTHER PROTEIN COUCH POTATO 141 262 - -
Gso8g1609 264 PANTHER PROTEIN COUCH POTATO 16 106 - -
Gso8g1609 264 SUPERFAMILY RNA-binding domain, RBD 20 243 IPR035979 GO:0003676
Gso8g1609 264 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 182 259 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1609 Gso-Chr8 15734497 15738287 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1609 - - gmx:100783764 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0095 7 842757 846378 Gso8g1609 8 15734497 15738287 GST