Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0095 ATGGCTCATCCGCCGTTGGATCCGTACTACCTTTACCAACAACAAGATGAGCGGAGCAACATCAACACGTTATTTGTCTCCGGTCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGCCCCGGCTTCGACTCCTGCCAACTCAAGTACACCGGCCGCGCCAACCAGGTCGTAGCGTTCGCCACGTTTTTCAACCACCAATCGGCAATGGCAGCGTTGCACGCCTTGAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTAGGAGGAAGCGTAAACCAGGTGGTGAAGCCTACGTGGTTATAGATAAAAGGTCCACAGGGGAGCCTGATCTTCAGGGATCATCAAGTGATGATGGTGACAGTGACCCTGATGAACCATCAGACAGTGGTGACAACCAGGGTGATATAGCAATCATGACAAGTGATGAAACGGCTGTAGGTTCTGACAATGCTGTATCTGTGGAGCAACATGGAAAGGGCAGTGCTGGAGGACTGTGTTCCACTCTTTTTATCGCAAATCTTGGTCCTAATTGCACTGAAGATGAATTGAAGCAGGCTTTTTCTGTATATACTGGATTCAACATGGTCAAAATGCGTTCCAGAGGAGGAATGCCTGTTGCATTTGTTGATTTTGAGGAAACTGACCAAGCTGCTAAAGTTGTGGAGGAGCTTCAGGGAAGCTTGCTGCCATCATCAGATCGGGGTGGCATGCACATTGAATATGCAAGGTCTAAAATGAGGAAGCGTTAG 798 0.4875 MAHPPLDPYYLYQQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGEAYVVIDKRSTGEPDLQGSSSDDGDSDPDEPSDSGDNQGDIAIMTSDETAVGSDNAVSVEQHGKGSAGGLCSTLFIANLGPNCTEDELKQAFSVYTGFNMVKMRSRGGMPVAFVDFEETDQAAKVVEELQGSLLPSSDRGGMHIEYARSKMRKR* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0095 265 PANTHER PROTEIN COUCH POTATO 13 106 - -
Gso7g0095 265 PANTHER PROTEIN COUCH POTATO 149 263 - -
Gso7g0095 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 149 263 - -
Gso7g0095 265 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 13 106 - -
Gso7g0095 265 MobiDBLite consensus disorder prediction 102 151 - -
Gso7g0095 265 SMART rrm1_1 23 94 IPR000504 GO:0003723
Gso7g0095 265 SMART rrm1_1 184 256 IPR000504 GO:0003723
Gso7g0095 265 Gene3D - 180 265 IPR012677 -
Gso7g0095 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Gso7g0095 265 Gene3D - 17 104 IPR012677 -
Gso7g0095 265 SUPERFAMILY RNA-binding domain, RBD 22 244 IPR035979 GO:0003676
Gso7g0095 265 MobiDBLite consensus disorder prediction 131 145 - -
Gso7g0095 265 CDD RRM_scw1_like 182 259 - -
Gso7g0095 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Gso7g0095 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 246 IPR000504 GO:0003723
Gso7g0095 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
Gso7g0095 265 CDD RRM_RBPMS_like 22 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0095 Gso-Chr7 842757 846378 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0095 - - gmx:100810989 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0095 7 842757 846378 Gso7g0095 7 842757 846378 ECH
Gso7g0095 7 842757 846378 Gso8g1609 8 15734497 15738287 GST