Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso8g1171 ATGGCGAACACACTATATAACGGCGCCACATGCCGAATCCCTCTCCGTGATGAATCCCTGGCCTTCTCTCGCCACGTTTCCAGATCCCTCTCTTTCCTCCTCAAAACACGTGCGGGAAAACAATCATACGCATTTGCGGTTAAGGCTTCTTCGCACTCTGACTTCGACGTTGACCTTTCGCTCAGTCCACGTGTCAATGCCGTCAAGCCTTCCAAAACCGTCGCCATCAGCGACCACGCCACCGCTCTCTTCCAAGCCGGCGTTCCCGTCATTCGCCTCGCCGCCGGCGAGCCCGATTTCGACACGCCCGCTCCCATAGCTGAGGCTGGGATTAATGCAATTCGCGAAGGTTACACGAGGTACACGCCCAATGCCGGAACCATGGAACTGCGCCAAGCGATTTGTCGCAAGCTTAAAGAGGAGAATGGGATTAGTTATACTCCTGACCAAGTTGTGGTTAGTAACGGAGCCAAACAGAGCATTGCTCAGGCAGTGCTTGCAGTTTGCTCCCCCGGAGATGAGGTTATTATTCCAGCTCCATTCTGGGTTAGTTACCCAGAAATGGCAAGGTTGGCTGATGCGACACCTGTGATTCTTCCAACCTTAATATCTGATAATTTCCTTTTGGATCCCAAACTTCTTGAATCCAAAATTACTGAAAGATCGAGACTGCTCATTCTTTGTTCACCATCTAACCCAACAGGATCTGTCTACCCTAAAGAATTACTTGAAGAGATAGCCCGGATTGTTGCAAAGCACCCCAGGCTCCTGGTTCTCTCCGATGAAATTTATGAACACATAATTTATGCACCAGCAACTCACACGAGTTTTGCATCTTTACCAGGAATGTGGGACAGAACTCTTACTGTGAATGGATTTTCCAAGGCCTTTGCAATGACTGGTTGGCGGCTTGGATATATTGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATCCAAAGTCAGTTCACTTCAGGGGCCAGTAGTATAGCTCAGAAAGCTGCAGTTGCTGCATTAGGACTAGGCCATGCTGGTGGGGAGGCAGTTTCTACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTAAAAAGTTTTAGAGAAATAGATGGTGTCAAGATATCTGAACCCCAGGGAGCATTTTATCTATTCCTTGATTTCAGCTTCTATTATGGAAGAGAAGCTGAAGGATTCGGTAAAATTGAGGATTCTGAGTCCCTCTGTCGATATCTACTGGATGTGGGCCAGGTAGCCCTGGTGCCAGGGAGTGCATTTGGAGATGACACTTGCATCCGCATCTCTTATGCAGAATCCCTTACTACCCTACAGGCAGCTGTAGAAAGAGTTAAGAGAGCACTTATCCCGCTGAGCTCTGCTGCACTTGTTTAA 1395 0.4824 MANTLYNGATCRIPLRDESLAFSRHVSRSLSFLLKTRAGKQSYAFAVKASSHSDFDVDLSLSPRVNAVKPSKTVAISDHATALFQAGVPVIRLAAGEPDFDTPAPIAEAGINAIREGYTRYTPNAGTMELRQAICRKLKEENGISYTPDQVVVSNGAKQSIAQAVLAVCSPGDEVIIPAPFWVSYPEMARLADATPVILPTLISDNFLLDPKLLESKITERSRLLILCSPSNPTGSVYPKELLEEIARIVAKHPRLLVLSDEIYEHIIYAPATHTSFASLPGMWDRTLTVNGFSKAFAMTGWRLGYIAGPKHFVAACGKIQSQFTSGASSIAQKAAVAALGLGHAGGEAVSTMVKAFRERRDFLVKSFREIDGVKISEPQGAFYLFLDFSFYYGREAEGFGKIEDSESLCRYLLDVGQVALVPGSAFGDDTCIRISYAESLTTLQAAVERVKRALIPLSSAALV* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso8g1171 464 Pfam Aminotransferase class I and II 89 451 IPR004839 GO:0009058|GO:0030170
Gso8g1171 464 Gene3D - 120 342 IPR015421 GO:0003824
Gso8g1171 464 SUPERFAMILY PLP-dependent transferases 61 455 IPR015424 -
Gso8g1171 464 Gene3D Aspartate Aminotransferase, domain 1 74 449 IPR015422 GO:0003824
Gso8g1171 464 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 27 459 - -
Gso8g1171 464 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 27 459 - -
Gso8g1171 464 CDD AAT_like 91 453 - -
Gso8g1171 464 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 292 305 IPR004838 GO:0003824|GO:0009058|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso8g1171 Gso-Chr8 10717039 10720653 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso8g1171 K15849 - gmx:100776446 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1539 5 38811404 38815114 Gso8g1171 8 10717039 10720653 GST
Gso8g1171 8 10717039 10720653 Gso13g1454 13 30029975 30033654 PCT