Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso13g1454 ATGGCCAATGCACTACATAACGCTGCCATCTCCAGAGTCATGTTTGGAGACCAATATTCCATTTCTCGTTGCGTGGTTCCATCCCTATCCACTCTTCCTCTCAGAGCCATGCACAAAGGAAAACACGTTGAGCTGAACAGAACGGTTATGGTGGTAAAGGCAAAGACTAATAGTGATTTTGATGACTCAGACGTTGACATTTCTTTGAGCCACAGAGTTAATGCTGTGAAACTTTCCAAAACTCTATCCATATGTGATCATGCCACTGCTCTTTTACAAGCTGGAGTTCCCGTTATTCGCCTATTTTTCGGAGAATCTGATTTCGACACACCTGGTGCTATAGCTGAGGCTGGGATGAATGCAATTCGTGAAGGTTACACGAGATATACCCCCAATGCTGGAACATTAGAATTGCGCCAAGCAATTTGTCATAAGCTAAAAGAGGAGAATGGAATTACGTATTCTCCTGATCAGATTGTGGTCAGTAATGGAGCCAAGCAAAGTATTGTTCAAGCAGTGCTTGCAGTTTGTTCCCCAGGGGATGAGGTTATTATTCCAGCTCCATTCTATGTGAGTTACCCAGAAATGGCAAGATTGGCTCATGCAACACCTGTGATTCTTCCAAGCCACATATCTAGTAACTTTCTTTTGGATTCCAAACTGCTTGAAGCCAACCTTACCGAAAGATCCAGACTGCTTATTCTTTGTTCACCGTGTAACCCCACAGGATCTGTCTACTCGAAGAAATTACTTGAAGAGATAGCCCAAATTGTAGCAAAGCACCCCAGGCTTCTGGTTCTCTCTGATGAAAATTATGAACACATAATTTATGCACCGGCAACTCATACAAGCTTTGCATCGTTACCGGGAATGTGGGACAGAACTCTAATTGTGAATGGACTTTCCAAGACATTTGCAATGACTGGTTGGCGGCTTGGGTATATTGCTGGTCCAAAACATTTTGTTGCTGCATGTGAAAAGATTCAAAGCCAGTTTACTTCAGGGGCAAGTAGTATATCTCAGAAAGCTGGGGTTGCTGCATTGGGACTAGGCTATGCAGGTGGGGAAGCTGTTTCTACCATGGTGAAAGCTTTCAGGGAAAGAAGGGATTTCTTGGTTGAAAGCTTTAGAGAAATGGATGGTGTGAAAATATGTGAACCACAGGGGGGATTTTATGTATTCCTTGATTTCAGCTCTTATTATGGAAGAGAAGCCGAAGGGTTCGGTGTAATTGAGAATTCTGACTCCCTCTGTCGATACCTGCTGGACAAGGGCCTGGTTGCCTTGGTGCCGGGGAGTGCATTTGGAGATGATACTTGCATCCGCATCTCTTTTGCAGAATCCCTTACTACTTTAAAAACAGCCGTTGAGAGAATTAAGAAAGCACTTATCCCTCTAAGCTCTTCTGCGCTTGTTTAA 1419 0.4369 MANALHNAAISRVMFGDQYSISRCVVPSLSTLPLRAMHKGKHVELNRTVMVVKAKTNSDFDDSDVDISLSHRVNAVKLSKTLSICDHATALLQAGVPVIRLFFGESDFDTPGAIAEAGMNAIREGYTRYTPNAGTLELRQAICHKLKEENGITYSPDQIVVSNGAKQSIVQAVLAVCSPGDEVIIPAPFYVSYPEMARLAHATPVILPSHISSNFLLDSKLLEANLTERSRLLILCSPCNPTGSVYSKKLLEEIAQIVAKHPRLLVLSDENYEHIIYAPATHTSFASLPGMWDRTLIVNGLSKTFAMTGWRLGYIAGPKHFVAACEKIQSQFTSGASSISQKAGVAALGLGYAGGEAVSTMVKAFRERRDFLVESFREMDGVKICEPQGGFYVFLDFSSYYGREAEGFGVIENSDSLCRYLLDKGLVALVPGSAFGDDTCIRISFAESLTTLKTAVERIKKALIPLSSSALV* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso13g1454 472 Gene3D Aspartate Aminotransferase, domain 1 82 457 IPR015422 GO:0003824
Gso13g1454 472 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 300 313 IPR004838 GO:0003824|GO:0009058|GO:0030170
Gso13g1454 472 Pfam Aminotransferase class I and II 98 459 IPR004839 GO:0009058|GO:0030170
Gso13g1454 472 Gene3D - 128 350 IPR015421 GO:0003824
Gso13g1454 472 PANTHER GLUTAMATE-OXALOACETATE TRANSAMINASE5 60 467 - -
Gso13g1454 472 CDD AAT_like 99 461 - -
Gso13g1454 472 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 60 467 - -
Gso13g1454 472 SUPERFAMILY PLP-dependent transferases 69 463 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso13g1454 Gso-Chr13 30029975 30033654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso13g1454 K15849 - gmx:100780254 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1539 5 38811404 38815114 Gso13g1454 13 30029975 30033654 PCT
Gso8g1171 8 10717039 10720653 Gso13g1454 13 30029975 30033654 PCT