Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2018 ATGGAAAATACGAACGGGTTCGTGCACTTTGATGTGGTTTCAGATGATGCAGATCACCACTTTCTGGGTTCAAATAAAGGAAAATGCTTCACAGATTTTAAGAGTGAAGTGTACCGCACCATCATGAAAGAGTGGAAAATCCTGGAGCAGAACTTACCGGAATCCATATACGTGCGGGTCTACGAACGACGCATTGATCTAATGAGAGCCGTGATCGTAGGTGCCGCCGGCACACCGTACCACGATGGTCTGTTCTTCTTCGACATAGGGTTCCCCTCCGATTACCCGAAAAATCCCCCAAAGCTGCATTACCACTCGTTCGGCTACAGACACAACCCAAATCTCTACTCCAGCGGAAGAGTGTGCTTGAGCCTTCTGAACACGTGGACAGGGAGAAAGAGTGAGAAGTGGGACCCATCTGGGTCCACGATGCTCCAAGTGTTGCTCTCTATCCAAGCACTGGTTCTCAACAAGAAGCCATATTATAACGAGCCTGGACTGGCTAGTATTGCGTCCTCCGAGTGGAGGTCACGTGCCTACAACGAGAACGTCTTTCTTATTACTTGCAGCACCTCCCTTCATCTGCTTCGGAGGCCTCCCTTCAACTTTGAAGCATTTGTCAGTGCCCATTTTCGCCAGCGCGCGTTTCGGATTCTCTCGGCATGCAGCGACTACACGAATGGGCGCGCGAGGGTTGGCCATTACTCTTTTGACTTGCGTCTGTCTTCTTCTTCGTCAAAGCTACATGTTTCACGGAGTTTTAAAAAGCAGATGATAGCGTTTTACCCTCGGCTTCTTCAAGCATTTCGACAGAATGGAGCTTCTTTGGAGGGTTTCGTCGAACATTTGGAGCTCGAGAGTAAGCATTCCGAAAACAAAAGCGGTGGAATCTTCAAGAAGGTCATGGAAAAGATCAAAAAGGCTTTCGGATTGAAGAAAAACAAAGGACAACAAAGTCGTCTTGAAAGTGCTTAA 975 0.48 MENTNGFVHFDVVSDDADHHFLGSNKGKCFTDFKSEVYRTIMKEWKILEQNLPESIYVRVYERRIDLMRAVIVGAAGTPYHDGLFFFDIGFPSDYPKNPPKLHYHSFGYRHNPNLYSSGRVCLSLLNTWTGRKSEKWDPSGSTMLQVLLSIQALVLNKKPYYNEPGLASIASSEWRSRAYNENVFLITCSTSLHLLRRPPFNFEAFVSAHFRQRAFRILSACSDYTNGRARVGHYSFDLRLSSSSSKLHVSRSFKKQMIAFYPRLLQAFRQNGASLEGFVEHLELESKHSENKSGGIFKKVMEKIKKAFGLKKNKGQQSRLESA* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2018 324 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 2 295 - -
Gso7g2018 324 Pfam Ubiquitin-conjugating enzyme 41 184 IPR000608 -
Gso7g2018 324 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 295 - -
Gso7g2018 324 Gene3D Ubiquitin Conjugating Enzyme 1 274 IPR016135 -
Gso7g2018 324 SMART ubc_7 39 193 - -
Gso7g2018 324 CDD UBCc 38 188 IPR000608 -
Gso7g2018 324 SUPERFAMILY UBC-like 33 200 IPR016135 -
Gso7g2018 324 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 193 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2018 Gso-Chr7 44224654 44225687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2018 7 274 Miscellaneous Gene Families AT2G33770 51.292 1.56e-81 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2018 K10581 - gmx:100791343 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2018 7 44224654 44225687 Gso17g0281 17 2510325 2511585 GST