Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0281 ATGGAAGTAAAGACGAATGAGTTTGGGCACTTCGACGTCGTTTCGGATGACTCAGATCACCACTTTCTGGGTTCAAATAATGGAAAATGCTTCTATGATTCAAATAGTAAAGTCTACAGAACCATTATGAAAGAGTGGAAAATCCTGGAGCAAAGCTTACCCGAATCAATCTACGTGCGTGTCTACGAGCGACGCATTGATCTAATGAGGGCCGTGATCGTAGGTACCGCGGGCACACCTTACCACGATGGTCTCTTCTTCTTCGACATCATGTTCCCCTCTGATTACCCTAAACACCCTCCAATGCTGCATTTCCATTCCTTCGGGTACCGAATCAACCCAAATCTCTACATCAACGGCAAAGTGTGTTTGAGCCTTCTGAACACGTGGAACGGGAAAGGAACGGAGATGTGGGACCCATCCAAGTCGACGATGCTCCAAGTGCTGGTCTCCATCCAAGGACTCGTTCTCAACAAGAACCCTTACTTTAACGAGCCTCTGCGTCTCTTCGATTCTGAGAGCAAGTCACGTGTCTACAACGAGAACGCGTTCATCATTACTTGCTACACCTCCTTCCTTCTGCTTCAGAGGCCGCTCCGAAACTTCGAAGCATTCGTCAGTGCCCATTTTTGCGAGCGGGCGTTTCCGATTCTCTCTGCCTGCAGCGACTACGTGAACGGGCGCGTGGAAGTTGGGTACTATTCTAGTGACCTGCGTTCGTCTTCGTCAACGGTACGAGTTTCAAGGGAATTCAAGGAGAAGATGATACAGTTTTACCCTAAGCTTTTTCAAGCGTTTCGACTGAAAGGTGCTTCTGTGGGGGGTTTGGTCGAACACTTGGAGTTGGAGATTGAGCAATCCGAAAAGAAAAGTAGCGGCGGCGGGCAAAGGCAGCAATTGAAGAACAAAAGCAGAAGAATCTTCAAGAAGGTCATGGAAAAGATCAAACAAACTTTGGGATGGAAGAAAAAGAGCCAGATTGAAGGGAGAGATCGCAGTCTTCAAAGTTCTTAA 1014 0.4753 MEVKTNEFGHFDVVSDDSDHHFLGSNNGKCFYDSNSKVYRTIMKEWKILEQSLPESIYVRVYERRIDLMRAVIVGTAGTPYHDGLFFFDIMFPSDYPKHPPMLHFHSFGYRINPNLYINGKVCLSLLNTWNGKGTEMWDPSKSTMLQVLVSIQGLVLNKNPYFNEPLRLFDSESKSRVYNENAFIITCYTSFLLLQRPLRNFEAFVSAHFCERAFPILSACSDYVNGRVEVGYYSSDLRSSSSTVRVSREFKEKMIQFYPKLFQAFRLKGASVGGLVEHLELEIEQSEKKSSGGGQRQQLKNKSRRIFKKVMEKIKQTLGWKKKSQIEGRDRSLQSS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0281 337 Gene3D Ubiquitin Conjugating Enzyme 1 270 IPR016135 -
Gso17g0281 337 SUPERFAMILY UBC-like 33 192 IPR016135 -
Gso17g0281 337 SMART ubc_7 40 192 - -
Gso17g0281 337 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 3 293 - -
Gso17g0281 337 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 192 IPR000608 -
Gso17g0281 337 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 3 293 - -
Gso17g0281 337 CDD UBCc 39 187 IPR000608 -
Gso17g0281 337 Pfam Ubiquitin-conjugating enzyme 42 167 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0281 Gso-Chr17 2510325 2511585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0281 8 270 Miscellaneous Gene Families AT2G33770 50.373 1.50e-79 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0281 K10581 - gmx:100810844 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0281 17 2510325 2511585 Gso17g0281 17 2510325 2511585 ECH
Gso7g2018 7 44224654 44225687 Gso17g0281 17 2510325 2511585 GST