Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g2015 ATGTGCCCTTCCGCCTCCCATTTCCGACCGGCATTCCACGTCCTCGACGCCGACCACGACGGCAAAATCAGCCACGACGACCTCCGCGCCTTCTACGCCGGAGTCGGCGGAGAAGGAGACGACGTGATCGGGGCAATGATGACGCTGGCCGACACCAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCGCGGCGGAGAGAAAACCCGTGGGGTGTGGGGCCATGGAGGACGTGTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCGCGACCTGAAGACTTACATGGCCTGGGCTGGCTTTTCGGCCACCGACGACGACATCAACGCCATGATCCGGTTCGGCGGCGGCGACCAAAACGGCGGCGTTACGTTCGATGGTTTGCTTCGTATATTGGCGCTTGAATGTTCCGCCGCTAATTAA 444 0.6171 MCPSASHFRPAFHVLDADHDGKISHDDLRAFYAGVGGEGDDVIGAMMTLADTNKDGFVEYEEFERVVAAERKPVGCGAMEDVFRVMDKDGDGKLSHRDLKTYMAWAGFSATDDDINAMIRFGGGDQNGGVTFDGLLRILALECSAAN* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g2015 147 Pfam EF hand 79 101 IPR002048 GO:0005509
Gso7g2015 147 SUPERFAMILY EF-hand 8 139 IPR011992 -
Gso7g2015 147 Pfam EF-hand domain pair 9 66 IPR002048 GO:0005509
Gso7g2015 147 CDD EFh 80 140 IPR002048 GO:0005509
Gso7g2015 147 ProSiteProfiles EF-hand calcium-binding domain profile. 40 73 IPR002048 GO:0005509
Gso7g2015 147 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Gso7g2015 147 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 4 143 - -
Gso7g2015 147 Gene3D - 3 144 - -
Gso7g2015 147 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Gso7g2015 147 SMART efh_1 7 35 IPR002048 GO:0005509
Gso7g2015 147 SMART efh_1 78 106 IPR002048 GO:0005509
Gso7g2015 147 SMART efh_1 114 142 IPR002048 GO:0005509
Gso7g2015 147 SMART efh_1 42 70 IPR002048 GO:0005509
Gso7g2015 147 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Gso7g2015 147 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Gso7g2015 147 CDD EFh 7 68 IPR002048 GO:0005509
Gso7g2015 147 PANTHER CALCIUM BINDING PROTEIN 4 143 - -
Gso7g2015 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 109 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g2015 Gso-Chr7 44193844 44194546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g2015 1 139 EF-hand Containing Proteins AT5G49480 55.000 9.99e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g2015 K02183 - gmx:100799972 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2015 7 44193844 44194546 Gso17g0287 17 2551254 2552003 GST