Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0287 ATGTGCCCTTCCGGTCGCACCCTCCTCCCTTCCTCCGTCTCCGATTTCCGACCGGCATTCGACGTCCTCGATGCCGACCGCGACGGCAAAATCAGCCGCGACGACCTCCGCGCCTTCTACGCCGGAGTCGGCGGCGGAGGAGATGACGTGATCGGGGCAATGATGACAGTGGCTGACACCAATAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTCTCGGCGGAGAGAAAGCCCGTGGGGTACTGTGGGGCCATGGAGGACGTGTTCAGGGTCATGGACAAGGACGGCGACGGCAAGCTCAGCCACCATGATCTGAAGACTTACATGGCCTGCGCTGGTTTTCCGGCCACCGACAACGACATCAACGCCATGATCCGATTCGGCGGCGGCGACCAAAACGGCGGCGTTACGTTCGATGGTTTGCTTCGTATATTGGCGCTTGATTGTTCCCCCGCTAATTAA 471 0.6051 MCPSGRTLLPSSVSDFRPAFDVLDADRDGKISRDDLRAFYAGVGGGGDDVIGAMMTVADTNKDGFVEYEEFERVVSAERKPVGYCGAMEDVFRVMDKDGDGKLSHHDLKTYMACAGFPATDNDINAMIRFGGGDQNGGVTFDGLLRILALDCSPAN* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0287 156 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 152 - -
Gso17g0287 156 SUPERFAMILY EF-hand 8 148 IPR011992 -
Gso17g0287 156 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Gso17g0287 156 CDD EFh 89 149 IPR002048 GO:0005509
Gso17g0287 156 ProSitePatterns EF-hand calcium-binding domain. 59 71 IPR018247 -
Gso17g0287 156 ProSiteProfiles EF-hand calcium-binding domain profile. 48 81 IPR002048 GO:0005509
Gso17g0287 156 Pfam EF-hand domain pair 16 75 IPR002048 GO:0005509
Gso17g0287 156 Gene3D - 6 82 - -
Gso17g0287 156 ProSiteProfiles EF-hand calcium-binding domain profile. 11 46 IPR002048 GO:0005509
Gso17g0287 156 PANTHER CALCIUM BINDING PROTEIN 1 152 - -
Gso17g0287 156 ProSiteProfiles EF-hand calcium-binding domain profile. 88 118 IPR002048 GO:0005509
Gso17g0287 156 Gene3D - 85 149 - -
Gso17g0287 156 SMART efh_1 123 151 IPR002048 GO:0005509
Gso17g0287 156 SMART efh_1 50 78 IPR002048 GO:0005509
Gso17g0287 156 SMART efh_1 87 115 IPR002048 GO:0005509
Gso17g0287 156 SMART efh_1 15 43 IPR002048 GO:0005509
Gso17g0287 156 Pfam EF hand 89 113 IPR002048 GO:0005509
Gso17g0287 156 ProSitePatterns EF-hand calcium-binding domain. 24 36 IPR018247 -
Gso17g0287 156 CDD EFh 15 76 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0287 Gso-Chr17 2551254 2552003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0287 1 148 EF-hand Containing Proteins AT5G49480 55.625 7.66e-55 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0287 K02183 - gmx:100527230 316.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0287 17 2551254 2552003 Gso17g0287 17 2551254 2552003 ECH
Gso7g2015 7 44193844 44194546 Gso17g0287 17 2551254 2552003 GST