Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g1022 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCTGAGGCCGACGAAGACGACAGCGGCGTCATCGCAGCGGAGAGGAAGATCGAGTGCTGTTCGAGCGGTAGGGGCAAAGTCGTCACCGGCTTCGACGACGGCGTCGTTTGCTTCTTCGATCGAGGCCTCAAGTTTAACTACGCTTTCCAGCCTCACTCCTCTTCCGTTCTCTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAAACAGCTTTGTGCCTCAAGGTTTTTGACCTTGACAAGATGCAATCGGAGAGTTCGAGCACGACAAGTCCTGATTGCGTTGGGATATTGCGAATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCATTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATCACTCGTTTCAAGCTTCAGGTGGAAAACAACCATTCGGACAAAACTCTTTCTGCTGTAACTGGACTTGGGTTTAGGGTGGATGGTCAATCTCTACAGTTATTTGTTGTGACTCCAAGTTCAGTGAGCTTGTTTTCGTTGCATGATCAACCGCCAAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGATCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTTCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCTCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTCTATGAATGGGGTAACATCATACTCATAATGAATGACAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGCAAGCTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTACAGACTCAGCAAGCAGATGCAGCAGCTACTGCTGAAGTGTTAAGGAAATATGGGGATCATCTATATAGCAAGCAAGACTATGATGAAGCAATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAGAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAAGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACAGAAGATGGTGACAAAAGAGGACGCTCAAATGGAGTGTACATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCACAATACCCTCTTAGAGTTGTATATATCCAATGAATTGAACTTTCCTTCAATGTCACAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAATCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGAAAAGAACCATCTCGAAAGACTTGAAAAGGGTTTACGCTTGCTTAAGACTGCATGGCCTCCAGAGACAGAACATCCACAATATGATGTTGATTTAGCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAGAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACACGATCATGAGGGGCTAATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACGCTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCATGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGTGATAATGAAAAAGAATGCCCTCAGTGTGCACCTGAATATAGGTCTGTCTTAGAAATGAAAAAAAATTTAGAGCAAAATTCTAAGGATCAGGACAGATTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCGTATCCGGAACTGCATCATCCAGTAGTGGTTTCTAA 2901 0.4161 MYQWRKFEFFEEKYGAKCAVPEADEDDSGVIAAERKIECCSSGRGKVVTGFDDGVVCFFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQTALCLKVFDLDKMQSESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRFKLQVENNHSDKTLSAVTGLGFRVDGQSLQLFVVTPSSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSHMLYEWGNIILIMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGDKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQEKNHLERLEKGLRLLKTAWPPETEHPQYDVDLAIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPQCAPEYRSVLEMKKNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPVSGTASSSSGF* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g1022 966 SUPERFAMILY WD40 repeat-like 39 258 IPR036322 GO:0005515
Gso7g1022 966 PIRSF Vps11 569 952 IPR016528 -
Gso7g1022 966 PIRSF Vps11 1 576 IPR016528 -
Gso7g1022 966 Pfam Zinc-finger 862 897 IPR001841 -
Gso7g1022 966 Coils Coil 816 853 - -
Gso7g1022 966 CDD RING-H2_Vps11 860 900 - -
Gso7g1022 966 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 945 - -
Gso7g1022 966 Gene3D - 35 316 IPR015943 GO:0005515
Gso7g1022 966 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 945 IPR016528 -
Gso7g1022 966 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 402 553 IPR000547 GO:0006886|GO:0016192
Gso7g1022 966 Pfam Vacuolar protein sorting protein 11 C terminal 902 944 IPR024763 -
Gso7g1022 966 Gene3D Tetratricopeptide repeat domain 336 650 IPR011990 GO:0005515
Gso7g1022 966 SUPERFAMILY RING/U-box 843 902 - -
Gso7g1022 966 Pfam Region in Clathrin and VPS 410 533 IPR000547 GO:0006886|GO:0016192
Gso7g1022 966 ProSiteProfiles Zinc finger RING-type profile. 862 897 IPR001841 -
Gso7g1022 966 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 569 776 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g1022 Gso-Chr7 13743132 13749428 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g1022 K20179 - gmx:100793279 1892.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1022 7 13743132 13749428 Gso3g0882 3 31777978 31784565 GST