Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g0882 ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGGCGCGAAGTGCGCGGTTCCCGAGAACGACGAAGACGACGGCGTCGTCGCGGCGGAGAGGAAGATCAAGTGCTGCTCGAGTGGTAGGGGCAAACTTGTCACCGGTTTCGACGACGGCGTCGTTTGCTTCTTCGATCGGGGCCTCAAGTTCAACTACTCTTTCCAGCCTCACTCTTCTTCCGTTCTTTTTCTTCAGCAACTCAAGCAACGCAACTTTCTGGTAACAATTGGGGAGGATGAACAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTAGACAAGATGCAACCAGAGAGTTCAAGCACAACGAGTCCTGATTGCGTTGGGATATTGCGGATATTCACTAATCAGTTTCCTGAGGCAAAGATTACATCGTTTTTGGTTTTAGAAGAAGTGCCACCTATACTACTCATAGCTATTGGCTTGGACAGTGGTTCTATTTACTGTATCAAAGGAGACATTGCACGGGAGCGTATCACCCGTTTCAAGCTTCAGGTGGAAAACAACCATTTGGACAAAACTCTTTCGGCTGTAACTGGACTTGGTTTTAAGGTGGATGGTCAATCTCTACAGTTATTTGCGGTGACTCCATGTTCAGTTAGCTTGTTTTCATTGCATGATCAACCGCCGAGAAGGCAGACCCTTGATCAGATTGGATCTGGTGTGAACAGTGTTGCAATGAGTGATCGCTCTGAGTTGATAATTGGTCGACCAGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAGAAGAAATTGCTTGGATGGTTCCGTGGATACCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAGCATACTTTCAACATCTATGACCTGAAGAATCGATTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTTATATGCTTTATGAATGGGGTAACATCATACTCGTAATGAATGATAAATCAGCTTTATGTATTGGAGAAAAGGATATGGAAAGTAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTCCAGACTCAGCAAGCAGATGCAGCAGCTACAGCTGAAGTGCTAAGGAAATATGGGGATCATCTGTATAGCAAGCAAGACTATGATGAAGCAATGGCTCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTTATACAGAAGTTTTTGGATGCTCAAAGGATCTACAACCTCACAAATTACTTAGAGAAGCTACATGAAAAGGGTCTTGCTTCTAAAGATCACACCACACTTCTATTAAACTGTTACACTAAATTGAAAGATGTTAAAAAGTTAAATCTATTTATTAAAAGCGATGACAGCATTGGGGAACTTAAATTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAGGAAAGCAGGGAGGCATGAATGGTACTTGAAGATTCTGCTTGAAGATCTTGGTAGCTATGAAGAAGCCTTGGAATATATTTCAAGCCTTGAATCAAGTCAGGCAGGGATGACAATAAAGGAGTATGGGAAGATTCTGATAGAGCACAAGCCAGTGGAGACAATTCAGATTCTCATAAGGCTTTGCACGGAAGATGGTAACAAAAGAGGGCGCTCAAATGGAGTGTATATGTCTATGTTGCCATCTCCTGTTGATTTTCTTAGCATCTTCATTCATCATCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAAGTTGAGATTCATAATACCCTCTTAGAGTTGTATATATCCAATGAATTAAACTTTCCTTCAATGTCGCAAGTTAATGATGGTGGAAATTACCTTAATGGAGCATCAGCAAAAACCATGATTTTAAGTGCTCAGTCTAATGGAAACATTGGTGATCACAAAAGTTCAGAGCAGGGAAAGGACCATCTCGAAAGGCGTGAAAAGGGTTTACGCTTGCTTAAGAGTGCATGGCCTCGAGAGACAGAACATCCACAATATGATGTTGATTTATCTATTATACTATGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTGTATGAAAAGATGAAACTCTATAAAGAAGTGATTGCTTGCTATATGCAGGCACATGATCATGAGGGGTTGATTGCATGCTGCAAGAGGCTGGGGGATTCTGTTAAAGGAGGGGACTCATCTCTTTGGGCAGATGTACTTAAATATTTTGGTGAGCTTGGAGAAGATTGTTCTAAAGAAGTAAAAGAAGTTCTGACTTATATTGAGAGGGATGATATTTTGCCCCCTATGATTGTGCTTCAAACTCTTTCCCGAAATCCATGCCTCACACTTTCTGTGCTCAAAGATTACATTGCTCGAAAGCTTGAGCGGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGGAAGATACACTGGCAATGAGAAAAGAGATTCAAGATCTTAGGACAAATGCTCGAATTTTTCAGCTTAGCAAGTGCACTGCGTGCACCTTCACCCTTGATTTGCCTGCCGTGCACTTCATGTGCATGCACTCATTCCACCTGCGCTGCCTTGGCGATAATGAAAAAGAATGCCCTGAGTGTGCTCCTGAATATAGGTCCGTCTTAGAAATGAAAAGAAATTTAGAGCAAAATTCTAAGGATCAGGACAGGTTTTTTCAGCAGGTGAAGAGCTCTAAAGATGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAATAAGTAATGGATCCACTTCTGGTCCCAGATCCGGAACTGCATCATCCACCAGTGGTTTCTAA 2898 0.4168 MYQWRKFEFFEEKYGAKCAVPENDEDDGVVAAERKIKCCSSGRGKLVTGFDDGVVCFFDRGLKFNYSFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQPESSSTTSPDCVGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLDSGSIYCIKGDIARERITRFKLQVENNHLDKTLSAVTGLGFKVDGQSLQLFAVTPCSVSLFSLHDQPPRRQTLDQIGSGVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRTGKHTFNIYDLKNRLIAHSALVKEVSYMLYEWGNIILVMNDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQTQQADAAATAEVLRKYGDHLYSKQDYDEAMAQYIHTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVKKLNLFIKSDDSIGELKFDVETAIRVCRAANYHEHAMYVARKAGRHEWYLKILLEDLGSYEEALEYISSLESSQAGMTIKEYGKILIEHKPVETIQILIRLCTEDGNKRGRSNGVYMSMLPSPVDFLSIFIHHPQSLMDFLEKYTNKVKDSPAQVEIHNTLLELYISNELNFPSMSQVNDGGNYLNGASAKTMILSAQSNGNIGDHKSSEQGKDHLERREKGLRLLKSAWPRETEHPQYDVDLSIILCEMNAFKDGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKRLGDSVKGGDSSLWADVLKYFGELGEDCSKEVKEVLTYIERDDILPPMIVLQTLSRNPCLTLSVLKDYIARKLERESKMIEEDRQAIEKYQEDTLAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVLEMKRNLEQNSKDQDRFFQQVKSSKDGFSVIAEYFGKGIISKISNGSTSGPRSGTASSTSGF* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g0882 965 Pfam Vacuolar protein sorting protein 11 C terminal 901 943 IPR024763 -
Gso3g0882 965 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 11 HOMOLOG 3 944 IPR016528 -
Gso3g0882 965 SUPERFAMILY WD40 repeat-like 38 257 IPR036322 GO:0005515
Gso3g0882 965 Pfam Region in Clathrin and VPS 409 532 IPR000547 GO:0006886|GO:0016192
Gso3g0882 965 SUPERFAMILY RING/U-box 842 901 - -
Gso3g0882 965 Gene3D - 34 331 IPR015943 GO:0005515
Gso3g0882 965 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 3 944 - -
Gso3g0882 965 PIRSF Vps11 568 951 IPR016528 -
Gso3g0882 965 PIRSF Vps11 1 576 IPR016528 -
Gso3g0882 965 Coils Coil 815 852 - -
Gso3g0882 965 Gene3D Tetratricopeptide repeat domain 332 649 IPR011990 GO:0005515
Gso3g0882 965 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 401 552 IPR000547 GO:0006886|GO:0016192
Gso3g0882 965 ProSiteProfiles Zinc finger RING-type profile. 861 896 IPR001841 -
Gso3g0882 965 CDD RING-H2_Vps11 859 899 - -
Gso3g0882 965 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 568 775 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g0882 Gso-Chr3 31777978 31784565 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g0882 K20179 - gmx:100778100 1919.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g1022 7 13743132 13749428 Gso3g0882 3 31777978 31784565 GST