Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0928 ATGTTCCTTTCAGTCAGATACTCCTTCACGCTCTTCTTCATTCTCCTCCTCTTATCACCTTCACACATTGCTTCAACAACACCAACACTAGCTCACACACTAACACAATCAGCCACCAAAATAGCCATCACAAACCGCAACATCCATAGCCTTAACAATGCTGGAAGAGGCACCAAAATCACCGGCATATCGCAATTCAAACGATACCTGCATCGTTTTGGGTACTTACAAAACAACAACATTAGTTTCAGTGATGAATTTGATGCCGTCTTGGAATCGGCTCTCTTTAGATACCAACGAAACCTTGGACTCCAAGTAACCGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCAAGATGCGGTGATCCAGACACAAACACAACACCCCATCATCACAATCACGTTCACAAAACGCGCTTAACGAAGAATTTTGTGTTTTTCCCGGGAAAACCACGTTGGTCACGTTCCATGCCAATGACACTAACCTATGCCTTCTCCCGTGAGAACATGATCCATAGTTTGAGCATGAAGGAGATAAGAGAGGCATTCCAACGTGCATTCACAAGGTGGGCTTCGGTTATTCCGGTTAGTTTCGTTGAGGTGAGTGACTTTGAACTCACGGACATAAAAATAGGGTTTTACAATGGGGAGCATGGCGATGGTGAACCCTTTGATGGGGTGCTTGGAGTGTTGGCTCACTCCTTCTCGCCGGAGATCGGCCGGCTCCACCTCGACGCAGCCGAGACGTGGGCGGTGGACTTCCGGTCGACCACGTCAGAGGTGGCGGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGCTGGGGTTGTCTCATAGTTCGGTGAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTGATTTGAACATTGATGACATAAAAGGAGTGCAATCTCTATATGGGTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCTGATATGTCCGCAAATCAAGGTTCTGCGTTTGTCGAACCTTTGAGGTTGATTTCTAGTTTGATAATTATAATTTCCCTCATTCATAGTTTATGTTCATATATAATCTGA 1101 0.4596 MFLSVRYSFTLFFILLLLSPSHIASTTPTLAHTLTQSATKIAITNRNIHSLNNAGRGTKITGISQFKRYLHRFGYLQNNNISFSDEFDAVLESALFRYQRNLGLQVTGKLDSNTVSQMITPRCGDPDTNTTPHHHNHVHKTRLTKNFVFFPGKPRWSRSMPMTLTYAFSRENMIHSLSMKEIREAFQRAFTRWASVIPVSFVEVSDFELTDIKIGFYNGEHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRSTTSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGSAFVEPLRLISSLIIIISLIHSLCSYII* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0928 366 SUPERFAMILY PGBD-like 56 128 IPR036365 -
Gso7g0928 366 CDD ZnMc_MMP 155 318 IPR033739 GO:0008237|GO:0008270
Gso7g0928 366 Pfam Matrixin 156 318 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gso7g0928 366 SMART col_5 152 319 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gso7g0928 366 PANTHER MATRIX METALLOPROTEINASE 12 359 - -
Gso7g0928 366 Pfam Putative peptidoglycan binding domain 63 118 IPR002477 -
Gso7g0928 366 PRINTS Matrixin signature 118 131 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso7g0928 366 PRINTS Matrixin signature 186 201 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso7g0928 366 PRINTS Matrixin signature 210 238 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso7g0928 366 PRINTS Matrixin signature 271 296 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso7g0928 366 PRINTS Matrixin signature 305 318 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso7g0928 366 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 148 321 - -
Gso7g0928 366 Gene3D Collagenase (Catalytic Domain) 52 324 IPR024079 GO:0008237
Gso7g0928 366 PANTHER METALLOENDOPROTEINASE 4-MMP 12 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0928 Gso-Chr7 10963915 10965236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0928 - K07999 gmx:100781237 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0928 7 10963915 10965236 Gso7g0928 7 10963915 10965236 ECH
Gso7g0928 7 10963915 10965236 Gso3g1012 3 34667154 34668338 GST