Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1012 ATGTTCCTTTCACTCAGATATTCCTTCACGTTCTTCTTCATTCTCCTCCTCTTATCACCTTCACACATTAATGCTTCAACAACAATACTAACACAATCAGCCACCAAAATAGCCATCACAAACCACAACATTATTCAGAGCCTCAACAATGCTAGAAGAGGCACCAAAATCACGGGCATATCGCAATTCAAACGTTACCTCCATCGTTTCGGGTACTTATTACAAAAGAGCAATACTAGTTTCAGTGATGAATTTGATGCCACGTTGGAATTAGCTCTCGTTAGATACCAACGAAACCTTGGACTCCAAGTAACCGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCAAGATGCGGTGATCCAGACACAAATGACACAACACCCCACAATCACAATCATCATCACAATCACGTTCACAACGTGCATTCAACAAAGAATTTTGTGTTTTTCCCGGGAAAACCACGTTGGTCACGTTCCATGCCAATGACACTAACCTATGCCTTCTCACGTGAGAACATGATCCATAGTTTGAGCAAGAAGGAGATAATAGAGGCATTCCAACGTGCATTCATGAGGTGGGCTTCGGTTATTCCGGTTAGCTTTGTTGAGGTGAGTGACTTTGAACTCACGGACATAAAAATAGGGTTTTACAATGCGGAGCATGGCGATGGTGAGCCCTTTGATGGAGAGCTTGGAGTGCTGGCCCACTCCTTCTCGCCAGAGATCGGCCGCCTCCACCTAGACGCGGCCGAGACGTGGGCCGTGGATGACTTCCGGTCGACCGCGTCGGAGGTGGCAGTGGACTTGGAGTCGGTGGCCACACATGAGATTGGACACTTGTTAGGGTTGTCTCATAGTTCGTTAAAAGAGGCTGTGATGTATCCAAGTTTGAGGCCTAGAGATAAGAGGGCTGATTTGAATATTGATGACATAAAAGGGGTGCAATCTCTATATGGCTCAAACCCTAATTTCAGATCCGAGTGGTCACTAGAGTCTGATATGTCTGCAAATCATGGTTCTGGACTTGTCAAACATTTGAGGTTGGCTTCTAGTTTGATAATTATAATTTCCCTCATTCATAGTTTATGTTCATGA 1104 0.4484 MFLSLRYSFTFFFILLLLSPSHINASTTILTQSATKIAITNHNIIQSLNNARRGTKITGISQFKRYLHRFGYLLQKSNTSFSDEFDATLELALVRYQRNLGLQVTGKLDSNTVSQMITPRCGDPDTNDTTPHNHNHHHNHVHNVHSTKNFVFFPGKPRWSRSMPMTLTYAFSRENMIHSLSKKEIIEAFQRAFMRWASVIPVSFVEVSDFELTDIKIGFYNAEHGDGEPFDGELGVLAHSFSPEIGRLHLDAAETWAVDDFRSTASEVAVDLESVATHEIGHLLGLSHSSLKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANHGSGLVKHLRLASSLIIIISLIHSLCS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1012 367 Pfam Matrixin 159 322 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Gso3g1012 367 SMART col_5 155 323 IPR006026 GO:0006508|GO:0008237|GO:0008270
Gso3g1012 367 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 151 325 - -
Gso3g1012 367 Gene3D Collagenase (Catalytic Domain) 48 328 IPR024079 GO:0008237
Gso3g1012 367 PANTHER MATRIX METALLOPROTEINASE 11 361 - -
Gso3g1012 367 PRINTS Matrixin signature 116 129 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso3g1012 367 PRINTS Matrixin signature 189 204 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso3g1012 367 PRINTS Matrixin signature 213 241 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso3g1012 367 PRINTS Matrixin signature 275 300 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso3g1012 367 PRINTS Matrixin signature 309 322 IPR021190 GO:0004222|GO:0006508|GO:0008270
Gso3g1012 367 CDD ZnMc_MMP 158 322 IPR033739 GO:0008237|GO:0008270
Gso3g1012 367 PANTHER METALLOENDOPROTEINASE 4-MMP 11 361 - -
Gso3g1012 367 SUPERFAMILY PGBD-like 53 126 IPR036365 -
Gso3g1012 367 Pfam Putative peptidoglycan binding domain 60 116 IPR002477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1012 Gso-Chr3 34667154 34668338 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1012 - K07999 gmx:100816597 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0928 7 10963915 10965236 Gso3g1012 3 34667154 34668338 GST