LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0756	ATGCTTAGATATTTTCACCGAATTTCCGGCGACCGGCCACCCACCACTCCGCCGGTTCAGCAGCCCAACGGCAACGTCACTGCCGCTGTCAACCAACGGCCACCGGCCGATGACGTCAGAGGAACCGACACGCCACCGGAAAAGGTGCCGCGGCGCGTTTTACCGGCAAATTTCGCGCCAAACGAGAAAGAATCTGGTCCCTCCCTGTTTGAAAGCATCATGCACAAATTTGTCAAGGTCGACGACAACGAAAGAGTTACTCAGAGGAGCCACTCATTGAATGGTAGTTTGCCTAAATCTTCTTTACCAGTGGGAATATGTGCTGATACTGATTGTAAAGTGGTGAACAAGGCAGAAGCAGCTTTTCAACCTTTGGTGAAAGTGAAAGATAATGCTGTGAATTTCAAGGAAAAGGCTAATCAAGAGAACATTGTGGTGGTTGAAACTGATGATAATGTCACTGGACCAGAAACCCCAGGGATGCTGCCTCTTGCTTCTCATGTGAAGCGAAGTCGAGAGGATGGATCCAAGTTTGGTTCGTTGCTGAATTCTGGCAAACGAGTTAGATTTCTTGACGGTTCATTGGAATTGGACATGACTAAGAAGGAAGCAGAAGTGGCTAGCAAGTTTGAATGGCTCGATCCTTCTCGAATCAGGGATGCTAATGGAAGAAGGCCGGATAATCCTTTGTATGACAGGACAACGCTTTATATTCCTCCAGAAGTTTTGGGGAAAATGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTTTGCTTTTTTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCCGACATTGGCCATAAGGAGCTTGATTGGAAAATAACGTTAAGTGGTGTTGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTCTAAAGCTGGTTGCACGTGGGTATAAGGTTGGACGAGTGGAGCAATTAGAGACATCTGGAGAAGCAAAGTCTAGAGGAGCTAACTCTGTTGTTCGGAGAAAATTAGTTCAGGTACTCACTCCATCAACCAATGTGGATGGTAATATTGGTCCTGATGCTGTTCACCTTCTTGCAATAAAAGAGGAAAACAATGTCTTGGATAATGGTGCAGTTGTGTATGGATTTGCTTTTGTTGATTGTGCTCGGCTTAGATTTTGGGTTGGCTCCATAGACGACGATGCTTCCTGTTCTGCTTTGGGGGCTTTATTGGTGCAAGTGTCACCCAAGGAAGTTATATATGATAGTAGAGGTTTGTCCAAAGAAGCTCAGAAGGCACTTAGAAAATTCTCGTTGAATGGTTCGAGGACACTACAGTTCACTCCAGTTCAGTCCATCACTGACTTGGTGAACAATGAAATTAGGGATTTAATTCACTCAAAGGGATACTTCAAAGGCTCGTCTCATTTGCTGGATCATGTACTGAGCAATGTGATTCATCGTGAAATCACCTTGTCTGCCCTAGGCAGGCTGATTGGTCATCTGGATAGATTGATGCTGGATGATGTCCTACAGAATGGGGATTTATATCCATACCAAGTTTACAAGGGTTGCCTCAAAATGGATGGTCCAACAATGATAAATCTAGAACTCTTTTTCAATAATGAGGATGGTGGCAAATCAGGTTCATTGTACAATTGTCTTGATAAGTGTGTAACTTCATCTGGAAAGCGGCTTCTTAGGAACTGGATCTGCTGTCCATTAATAGATCCTGAAATAATTAACAAAAGGCTTGATGTAGTGGATGATCTAATGGCTAACCCAGAGATTGTGCCACATATTGCTCAACATCTTCGCAGGCTTCCAGACTTGGAACATTTGCTTGGCCGAATTAAGTCCAGCCTTCAATTATCAGGCCCTCTCTTATTGCCCCTATTGGGAAAGAAAATATTGAAGCAGAGGGTGAAAGTGTTTGGATCACTTGTGAGAGGCCTTCGGACTGCTTTGAGTTTGTTGCTTCTTCTACAGAAAGAGCAGCCTCTAATATCGTCTTTGACCAAAGTTTTTAAACTTCCAATTCTGACTGGTAGTAACGGGCTTGATCAATTTCTTGCTCAGTTTGAAGCAGCAGTAGACAGTGACTTCCCAAATTACCAGAATCACAATGTTGCAGATTCTGATGCTGAAACACTCAAAATACTTGCTGAATTATTTTTGGAGAAAGCTGCTCAGTGGTTTGAAGTTGTTCATGCCATCAATTGCATTGATGTATTAAGATCTTTTGCTGTTACTTCTACCTTTTCTTGCGGAACTATGTCTAGGCCAGTTATAGTGGCATCAAAAGGTACAAGTAAAGACAATGGCAGAACAGTGCTCAAGATGAAGGGACTATGGCATCCATTTGCCCTTGGAGACAGTGGATGTTTGCCTGTCCCCAATGATGTGATCCTTGGTGAGAATGAAGATGGGTTGTATCCTCGAACTTTGCTGCTTACTGGACCAAACATGGGTGGAAAGTCAACACTTCTGCGTTCCACCTGTCTGGCTGTTATTATGGCCCAGCTAGGCTGTTATGTGCCATGTGAAAGTTGTGTTCTCTCAGCTGTGGATATCATCTTCACACGACTTGGAGCCAAAGATAGAATCATGACAGGCGAGAGTACCTTCTTTATTGAGTGTACTGAAACGGCATCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCTTATGCAGTATTCCGGCATCTGATTGAAAAAGTTAACTGTCGCATGCTATTTGCCACCCACTACCATCCACTCACGAAAGAGTTTGCTTCTCATCCACGTGTTATAATGCAACACATGGCTTGTGCTTTCAATTCAAAATCGGATACCCACTCCATGCGTGATCAGGAACTAGTTTTCCTATATCGGCTTGCCTCCGGACCATGTCCAGAGAGCTACGGCTTGCAGGTGGCCCTCATGGCTGGAATCCCAGAAAAAACGGTAAACATTGCTTCTAAGTCAAGCCAGAAGATGAAAAAATCAATTGGACAAAGTTTTAGGTCAAGCGAACAGAGATCAGAGTTCTCAACCCTTCATGAAGAATGGTTGAAGACCTTGGTATCTATCTCACGCATAGAGGATTGTAACTCTTTGGATGAAGATGCTTTAGATACATTAATCTCTCTGTGGTATGAACTTAAAACTTCATTTATATCAGGCAAGTAA	3240	0.4321	MLRYFHRISGDRPPTTPPVQQPNGNVTAAVNQRPPADDVRGTDTPPEKVPRRVLPANFAPNEKESGPSLFESIMHKFVKVDDNERVTQRSHSLNGSLPKSSLPVGICADTDCKVVNKAEAAFQPLVKVKDNAVNFKEKANQENIVVVETDDNVTGPETPGMLPLASHVKRSREDGSKFGSLLNSGKRVRFLDGSLELDMTKKEAEVASKFEWLDPSRIRDANGRRPDNPLYDRTTLYIPPEVLGKMSASQKQYWSVKCKYMDVLLFFKVGKFYELYEMDADIGHKELDWKITLSGVGKCRQVGISESGIDDAVLKLVARGYKVGRVEQLETSGEAKSRGANSVVRRKLVQVLTPSTNVDGNIGPDAVHLLAIKEENNVLDNGAVVYGFAFVDCARLRFWVGSIDDDASCSALGALLVQVSPKEVIYDSRGLSKEAQKALRKFSLNGSRTLQFTPVQSITDLVNNEIRDLIHSKGYFKGSSHLLDHVLSNVIHREITLSALGRLIGHLDRLMLDDVLQNGDLYPYQVYKGCLKMDGPTMINLELFFNNEDGGKSGSLYNCLDKCVTSSGKRLLRNWICCPLIDPEIINKRLDVVDDLMANPEIVPHIAQHLRRLPDLEHLLGRIKSSLQLSGPLLLPLLGKKILKQRVKVFGSLVRGLRTALSLLLLLQKEQPLISSLTKVFKLPILTGSNGLDQFLAQFEAAVDSDFPNYQNHNVADSDAETLKILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSTFSCGTMSRPVIVASKGTSKDNGRTVLKMKGLWHPFALGDSGCLPVPNDVILGENEDGLYPRTLLLTGPNMGGKSTLLRSTCLAVIMAQLGCYVPCESCVLSAVDIIFTRLGAKDRIMTGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRMLFATHYHPLTKEFASHPRVIMQHMACAFNSKSDTHSMRDQELVFLYRLASGPCPESYGLQVALMAGIPEKTVNIASKSSQKMKKSIGQSFRSSEQRSEFSTLHEEWLKTLVSISRIEDCNSLDEDALDTLISLWYELKTSFISGK*	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g0756	1079	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	781	1017	IPR027417	-
	Gso7g0756	1079	SUPERFAMILY	DNA repair protein MutS, domain II	369	544	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	CDD	ABC_MSH6_euk	785	1009	-	-
	Gso7g0756	1079	Gene3D	MutS, connector domain	367	532	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	Pfam	MutS domain V	822	1016	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH7	231	1071	-	-
	Gso7g0756	1079	Gene3D	DNA repair protein MutS, domain I	205	365	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	899	915	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	SMART	DNAend	551	797	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	Pfam	MutS domain II	369	518	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	231	1071	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
	Gso7g0756	1079	Pfam	MutS domain I	249	359	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	Gene3D	-	775	1064	IPR027417	-
	Gso7g0756	1079	Pfam	MutS domain III	537	754	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	SMART	mutATP5	818	1014	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	Gene3D	-	533	760	-	-
	Gso7g0756	1079	SUPERFAMILY	DNA repair protein MutS, domain I	235	356	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
	Gso7g0756	1079	MobiDBLite	consensus disorder prediction	1	66	-	-
	Gso7g0756	1079	SUPERFAMILY	DNA repair protein MutS, domain III	534	757	IPR036187	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0756	Gso-Chr7	8227835	8236341	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0756	K08737		-	gmx:100776965	2097.78

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0756	7	8227835	8236341	Gso7g0756	7	8227835	8236341	ECH
	Gso7g0756	7	8227835	8236341	Gso9g1554	9	39824741	39833293	GST