Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0446 ATGGAGCTCGACCTCCGTTCATTCCTTCACTCTCCGACCTCTACCTCCTCCTCCGACGCCGACGACGGCGCTCCTCCCCGCACCATCGATGATATTCTCAACGACTGTGACACTTCCTCTTCCTCACCCTCCCCTCCTTCTTCTCCCTCTCACTCACTCTCCAACAATTCCCGCCCTCAAAACCCCACACTCCAACAAAAACCACTCCAACCCGCACCCGATTCGTTTTCTCGGGTCAAACCCGCTGAATTCTCCGACCGCGCACGCGTTTCGCGCCCGTTCTCCTCTCTCCTGCACGGCGTCAGGTCCAATGCCAAGCCCGGCGCGGCGCTCGCCGCGGCGGCGGCGGCGTCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATCTCCCGTAGGAAATCCGCGGCTGCGAATATTGTCGAATCGAGTTCGATCGCTGCCACCGTCGATGTTTCTTCCAAAGGCGAGTTGGGCGAGCCTAGCGAGAAATTCGATCCAGTGCCGCCGAAAATCGAGACTCCGTCTAGTGAAAGTGCTTCTGCTATTGGTGAACGTTTTGAGAGTGATGCGGAAATTGTCACTGATTTGAAGGCTGGCAGTGATGACATTCAGGTGCACACTGATAATAATAATAATAATGCTGATGATGATGATGATAATGATAATGATTCTTCTATCGTGAGTGAGGAAAAGAGGGATTTAGATGAGGTTGACCGTGATCATGAGAAGGATATGAGTTCTGCACCGTTTGATGACGATGATGATCGTGGGTTTGATGGAAAAGGCGATGATGAGAGAATCACTGCTACGGGTGTAGCTGTGGAAACAGAAGAAGAAGTAGTAGTGAGTAATGATATTAGTTCTATGGAAGATGTTAAGAATGAGGTGAGTGTTGGTGGTGATGATGAGGGTAGTTCCTTAGGTGATGTTGCTGAGCTAGTGGAAGAGAGGCTTGAGGAATTGGAAAACAGAAGGGCTGCTAAGAGAGCTGAGAAGAAACGGGAGTCTTCGATGAAGCCACTTGAATTGGCCGAGGAACTGGAGAAGAAGCGTGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCAATGAGGCTTGAGGGCGTTCGGAGAGGGTCCACGACATTGGGATACTTTGATGTTGATGCTGGTAATGCGTTCACGAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCCGCCCGAGCCTTGGCAGTTCATGCTAATTACATTGCAGTAGGAATGTCAAAAGGGCTCATTGTTGTGTTTCCCAGTAAATATTCCATTCACCATGCTGACAACTCTGATGGAAAGATGATGATGCTTGCTATACAAGGTGATCGGTTGCATGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGCCATCTTACCCTGTGGGATGTACAGAAAGGGGTAGTGGCAAAAGTTATTAGTGGTGAACATACAGCACCAGTAGTACATACATTGTTTCTAGGACAGGATCCTCAGAATACTCGTCAATTTAAAGCAGTTACTGGTGATTGTAAGGGTCTGGTTCTCTTCCACATCATCTCAGTGGTTCCTTTGTTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACGGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCGCCTTATACCCAGGGAAACACCTCAGCCCCAGCCAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACGTTGCAAGTTTATGCTCAGCTCTCTAGGCCAGATGGAGTTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACACAAATATGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAGGTTTTGGTTGCAAAGTTGGTCAAATCAGAATTAAAAGTATATGGAAGATGGTCTCTTGACGGTGCGGCTTTAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAAGTGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTTCTGTAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATATATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTGGGCCCAACACATCTTCTTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGGAATGACTCTTTATGATGGCCATGCTCATGGAGTTGTTGACCTTCCTAGAACCTTGGATGCTGTACATGAAGCCATAATGCCCTTCTTGATGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCCTATATTTCAGTGGCATTCTGCAATCAAATTGGAAAACTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAGATAAAGGAGCAATATGCCCGTGTTGGTGGAGTTGCCGTTGAATTTTGCTGTCATATCAAACGGACAGACATTCTTTTTGATGAAATTTTCAACAAGTTCGTGGATGTTCAACAGAGAGAAACATTTTTGGAGCTTCTGGAGCCCTATATTTTGAAGGACATGCTTGGATCTCTACCTCCCGAGATTATGCAAGAACTGGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGATTATGCCGGGAGCATGGACTATATAGTGCCCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTAGGGCACCTCTGGAGGAGTTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGCGCTTGGGTATCGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGTGGAAGTATTCCTCCCACACGTTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAGGACTCCTGTACTGCGAAATCACAGACAGTTTCAGACTTTGTGTACAGACGACCACACCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTAGATGTCCTCAGATGTGCTTTCATGGAAGATGGAATTTCAAATGCCAGCTCATCTTCACCAGATTCAGCCAATAAACCTATAGCGGAAGCAAAAAAGGAAAATGATAATGTTAACAAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATATGAATATTGTTCCCACAGATAAAACCTCTAGTAGTGGTGATGATGGGTTGATAAAAGATTGTCCTTCCAAGGACATAGGTTATTTGTTTGAGTTCATTGCATATTATGTTGCTCTCCAAAGGGCTAAGATTTCAAAGGGTGTGCTTTGTCAAATATTGGAATATTTGACATCAGATAGTCAGTTTTCAACTAATGTTTCTGTTCAAGGATCATCTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTTTGGAAATACTTCCTGAATCAGACTGGGATGCATCATTTGTGCTAGATCTATGCGAGAGAGCAAAATATCATCAGGTTTGCGGATTGATTCATAGTATCAGACATGAATATGTGGCGGCATTGGATAGTTATATGAAAGATGCAGATGAGCCTGTTCATGCTTTCTCCTTTATTAACAGAGCATTCTCACAGTTGACTGACAATGATCATGCAGCTTTTCGGTCAGCAGTCATATTTCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGCGCATTCCATATGGTTATCAGTCATTTTAGCAATGAAAGTTCCCGTATCATAACTGATCTTCACTGTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCATTTATTTGGCACCCTAGACCTGTCTAATTTGAGAAAAGATGGTACTATGGATCCCCTTAATGGAAGGCAGGTTAAGGATCACCCACAAGGAGTCAGAGATTACTTAGAGAATATATCTAATTTCCCCAAGTACATGCGTGAAAATCCTATTCGAGTTCCTGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCAAGTATGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCATCTGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTATATGATAAATTTGTTGAGCTTGATACCGCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGTTGGTTCTTCACATATGGAAGTATTCAACAGTGTTTTGAAAACAAAGGAGGTAAGTGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGATCCATTGATGGATTCAAATGTTGAAGAGAGAGCATATGAAAGTAAGAGTTATTTTGGAATGCTAGCTGGATCAGCAGATTCACAACAGGACAAAGACACCCATAAAAGCAGTTGGAAAATTTCAAAGTCCTGGACTGGTCATATCTTGAAAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATCGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTCCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACTTACAATATTGGGAATGCTGGGAACATATGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCATTAATAGAGGATGATTCTTTTTATACTATGAGTTTACTCAAAAAAGGGGCCTCCCATGGATACGCTCCCAGGAGTCTCGTGTGCTGTGTTTGTAATTGCCCTCTTACAAAGAACTCTGTTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGGATCGAGCAAAACATCTTCATCTGGATGCCCTGTATGCCCTGTATGCATGCCCAACCAGAAATCCCAGCAGTCTAGAAACAAATCAATCATTGCAGCAAATGGCTTGGTCAATAAATTCTCATCAAGGCCTCAATACCCCCATGGAAGTTCCATTCATCCTCATGACAGTGATTTATCAGATAATATGTATGGACAACAACAGATATCACGGTTCGAGATCTTGAGCAGCTTGCAGAAGAATCGGAGATTTATGCAAATAGAAAACTTGCCTCCATTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGGCAAACTTTCTGACTGGCGAAAGTAGCAATAGTTCCAGTGCTATTGAGAAACAAAGTAGAAACAAGCAAAATCGGGAGCTGAGAGTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAAGCATATTTGGCAAGGAGAAGACCAATAAGCGGTGA 5736 0.4317 MELDLRSFLHSPTSTSSSDADDGAPPRTIDDILNDCDTSSSSPSPPSSPSHSLSNNSRPQNPTLQQKPLQPAPDSFSRVKPAEFSDRARVSRPFSSLLHGVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAANIVESSSIAATVDVSSKGELGEPSEKFDPVPPKIETPSSESASAIGERFESDAEIVTDLKAGSDDIQVHTDNNNNNADDDDDNDNDSSIVSEEKRDLDEVDRDHEKDMSSAPFDDDDDRGFDGKGDDERITATGVAVETEEEVVVSNDISSMEDVKNEVSVGGDDEGSSLGDVAELVEERLEELENRRAAKRAEKKRESSMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDAGNAFTRAISSQTFRREQGSARALAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMMMLAIQGDRLHAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVAKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPYTQGNTSAPASSISSMMGGVVGGDAGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQICSSTENMSAEAVERVSLLAIAWERKVLVAKLVKSELKVYGRWSLDGAALGLAWLDDQMLVVLTSSGQLYLFSKDGTVIHQTSFSVDGIGGDDLVSYHTHFINIFGNPEKAYHNSVAVRGASIYILGPTHLLVSRLLPWKERISVLRKAGDWMGALNMGMTLYDGHAHGVVDLPRTLDAVHEAIMPFLMELLTSYVDEVFSYISVAFCNQIGKLDQSNDSNSRSNSVHSEIKEQYARVGGVAVEFCCHIKRTDILFDEIFNKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFRAPLEELFAVLQNSQKESATALGYRMLVYLKYCFTGLPFPPGRGSIPPTRLPSLRRELVEFLLKDSCTAKSQTVSDFVYRRPHLNLYLLLKLDTEATLDVLRCAFMEDGISNASSSSPDSANKPIAEAKKENDNVNKTQNALVQNTVDALIQIIDMNIVPTDKTSSSGDDGLIKDCPSKDIGYLFEFIAYYVALQRAKISKGVLCQILEYLTSDSQFSTNVSVQGSSPKNREKQVLALLEILPESDWDASFVLDLCERAKYHQVCGLIHSIRHEYVAALDSYMKDADEPVHAFSFINRAFSQLTDNDHAAFRSAVIFRIPELVELSREGAFHMVISHFSNESSRIITDLHCHPRSLFLYLKTLIELHLFGTLDLSNLRKDGTMDPLNGRQVKDHPQGVRDYLENISNFPKYMRENPIRVPDDLIELYLELLCKYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDASAFLLERVGDVGSALSLTLSDLYDKFVELDTAVEAVVLNHRRVGSSHMEVFNSVLKTKEVSDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSNVEERAYESKSYFGMLAGSADSQQDKDTHKSSWKISKSWTGHILKKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKLTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYAPRSLVCCVCNCPLTKNSVSSGIRIFNCGHAIHLQCEVSEIEGSSKTSSSGCPVCPVCMPNQKSQQSRNKSIIAANGLVNKFSSRPQYPHGSSIHPHDSDLSDNMYGQQQISRFEILSSLQKNRRFMQIENLPPLKLAPPAVYHEKVSKVANFLTGESSNSSSAIEKQSRNKQNRELRVKGSSIRFPLKSSIFGKEKTNKR* 1912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0446 1911 MobiDBLite consensus disorder prediction 151 272 - -
Gso7g0446 1911 MobiDBLite consensus disorder prediction 33 72 - -
Gso7g0446 1911 MobiDBLite consensus disorder prediction 1867 1891 - -
Gso7g0446 1911 Pfam Region in Clathrin and VPS 1435 1512 IPR000547 GO:0006886|GO:0016192
Gso7g0446 1911 MobiDBLite consensus disorder prediction 226 272 - -
Gso7g0446 1911 SUPERFAMILY WD40 repeat-like 404 743 IPR036322 GO:0005515
Gso7g0446 1911 ProSitePatterns Trp-Asp (WD) repeats signature. 471 485 IPR019775 -
Gso7g0446 1911 Gene3D - 375 523 IPR015943 GO:0005515
Gso7g0446 1911 PANTHER VACUOLAR PROTEIN SORTING VPS41 268 1839 IPR045111 GO:0006623
Gso7g0446 1911 MobiDBLite consensus disorder prediction 8 22 - -
Gso7g0446 1911 SUPERFAMILY RING/U-box 1710 1776 - -
Gso7g0446 1911 CDD RING-H2 1717 1765 - -
Gso7g0446 1911 ProSiteProfiles Trp-Asp (WD) repeats profile. 459 493 IPR001680 GO:0005515
Gso7g0446 1911 Coils Coil 312 339 - -
Gso7g0446 1911 MobiDBLite consensus disorder prediction 1 110 - -
Gso7g0446 1911 Coils Coil 1137 1157 - -
Gso7g0446 1911 ProSiteProfiles Zinc finger RING-type profile. 1717 1765 IPR001841 -
Gso7g0446 1911 Pfam Golgi CORVET complex core vacuolar protein 8 933 1117 IPR025941 -
Gso7g0446 1911 PANTHER - 268 1839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0446 Gso-Chr7 4286409 4298272 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0446 K20178 - gmx:100780869 3548.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0446 7 4286409 4298272 Gso7g0446 7 4286409 4298272 ECH
Gso7g0446 7 4286409 4298272 Gso16g0152 16 1619676 1632383 GST