Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso16g0152 | ATGGAGCTCGACCTCCGTTCGTTCCTTCACTCTCCCACCTCCTCCGACGACGCTCCTCACCGCACCATCGATGATATTCTCAACGACTGTGACACTTCCTCTTCCTCACCCTCCCCTCCTTCTTCTCCCTCTCACTCACTCTCCAACAATTCCCATCCTCAAAACTCCACACTCCAACCCGCACCCGATTCGTTTTCTCGGTTCAAACCCACTGAATTCTCCGACCGTGCACGCGTTTCGCGCCCGTTCTCCTCTCTACTCCACAGCGTCAGGTCCAATGCCAAGCCCGGCGCGGCGCTCGCCGCGGCGGCGGCGGCATCTCGATCCGTTCCTACGCCGCACGCGGCGGCGATCATCTCCCGGAGGAAATCCGCGGCCGCGATCAGCGTCGAATCGAGTTTAATCGCTGCCAACGGCGATGATTCTTCCGCTGTTTCTGCCAAAGGCGAATTGGGCGAGCCTAGCGAGAAATTTGATCCAGTGCCGCCGATGATTCCTCCGCCTAGTGAAAGTGCTTCTGCTATTGGTGAACGTTTTGAGAGTGATGTGGAAATTGCCACTGATTTGAAGGCTGGCAGTGATGACATTCAGGTGCACAGTGATAATAATATTAATGCTAATGTTAATGATGATGATGATGATGAAAATGATAATGATTCTTCTATCGTGAGTGAGGAGAAGAGGGACTTAGATAAAGTTGACTGTGATCATGAGAAGGATATGAATTCTGCACCGTTTGATGAAGATGATGATCGTGGGTTTGATGGAAATGATGATGATGATGAGAGAATCACAGCTACGTATGCAGCTGTGGAAACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTAGTGAATAATGGTAGTAGTTCTATGGAAGATGTTAGGAATGAGGTGAGTGTTGGTGGTGGTGATGATGATGGTAGTTCATTAGGTGATGTTGCTGAGCTAGTGGAAGAGAGGCTCGAGGAATTGGAAAACAGAAGGGCTGCTAAGAGAGCCGAGAAGAAACGAGAGTCTTTGATGAAGCCTCTTGAATTGGCTGAGGAACTGGAGAAGAAGCGTGCTTCAACTGGTTTGCATTTGGAAGAGGGTGCTGCTGCCCAGCCCATGAGGCTTGAGGACGTTCGGAGAGGGTCCATGACGTTGGGATACTTTGATGTTGATGCCGATAATGCGTTCACGAGGGCAATTTCGTCCCAAACATTCAGGCGTGAGCAAGGTTCCGCCCGAACCTTGGCAGTTCATGCTAATTACATTGCAGTGGGAATGTCAAAAGGGCTCATTGTTGTGTTTCCCAGTAAATATTCCATTCACCATGCTGACAACTCTGATGGAAAGATGATGATGCTTGCTATACAAGGTGATCGGTTGCATGCTCCAGTGACATCCATGTCTTTCAATCAACAAGGAGACCTTCTTTTAGCTGGTTATGGTGATGGTCATCTTACCCTGTGGGATGTACAGAAAGGGGTAGTGGTTAAAGTTATTAGTGGTGAGCATACAGCACCAGTAGTACATACATTGTTTCTAGGACAGGATCCTCAGAATACTCGTCAGTTCAAAGCAGTTACTGGTGACTGTAAGGGTCTGGTTCTCTTCCACATTATCTCAGTGGTTCCTTTATTTAGTAGATTCTCCATCAAAACTCAGTGTCTTCTTGATGGGCAAAGTACGGGCTTGGTGCTTTCAGCTTCACCACTCCTTTTTGATGACTTCAGTGGAAGTGCTTCACCTTTTACCAGGGGAAACACCTCTGCCCCAGCCAGCAGTATAAGCAGCATGATGGGAGGTGTTGTTGGCGGAGATGCAGGTTGGAAACTCTTCAATGAAGCCCCTTCTTTGGTTGAAGAAGGTGTGGTTGTATTTGTCACCCATCAAACTGCTTTGGTGGTACGGCTGAGCCCTACGTTGCAAGTCTATGCTCAGCTCTCTAGGCCAGATGGAGTTCGGGAGGGTTCCATGCCATATACTGCATGGAAATACATGACGCAAACTTGTAGTTCTACTGAAAATATGTCTGCAGAAGCTGTTGAAAGAGTTTCATTGCTTGCAATTGCTTGGGAACGGAAGGTTCTGGTTGCAAAGTTGGTCAAATCAGAATTAAAAGTATATGGAAGATGGTCTCTTGACGGTGCGGCTTTAGGTCTAGCATGGTTGGATGATCAGATGCTGGTAGTTCTCACTTCAAATGGACAACTGTATTTATTTTCCAAGGATGGAACTGTGATTCACCAAACAAGTTTTTCCATAGATGGTATTGGAGGAGATGATCTAGTCTCTTATCATACTCACTTCATCAATATATTTGGAAATCCTGAGAAAGCTTATCATAACTCTGTTGCTGTAAGAGGAGCTTCTATTTATATACTGGGCCCAACACATCTTCTTGTTTCTCGTCTTCTCCCTTGGAAAGAGCGTATTTCTGTTTTGCGGAAAGCAGGTGACTGGATGGGTGCCTTGAACATGGCAATGATTCTTTATGATGGCCATGCTCATGGAGTTGTTGACCTTCCTAGAACCTTGGATGCTGTACATGAAGCCATAATGCCCTTCTTGATGGAGTTGCTTACATCATATGTTGATGAAGTGTTCTCATATATTTCGGTGGCATTCTGCAATCAAATTGGAAAACTGGACCAATCCAATGATTCAAATAGTAGAAGCAATTCAGTGCATTCTGAGATAAAGGAACAATACGCCCGCGTTGGTGGAGTTGCCGTTGAATTTTGTTGTCATATCAAACGGACAAACATTCTTTTTGATGAAATTTTCAACAAATTTGTGGATGTTCAACAGAGAGAAACGTTTTTGGAGCTTCTGGAGCCATATATTTTGAAGGACATGCTTGGATCTCTACCTCCTGAGATTATGCAAGAACTAGTAGAGTATTATAGCACCAAAGGGTGGTTACAGCGGGTTGAGCAATGTGTACTTCACATGGATATATCATCCTTGGATTTTAATCAGGTTGTCAGGTTATGCCGGGAGCATGGACTATATAGTGCGCTGGTGTATGTCTTCAATAAAGGATTAGATGATTTTACGGCACCTCTGGAGGAGTTGTTTGCTGTCTTACAAAATAGCCAAAAGGAAAGTGCTACTGTGCTTGGGTATCGAATGCTGGTTTATCTCAAGTACTGCTTTACAGGTCTTCCCTTTCCACCAGGCCGCGGAAGTATTCCTCCCACACGCTTACCATCTCTTAGAAGAGAACTTGTAGAGTTTTTGTTAAAGGACTCCTGTACTCCGAAATCACAGACAGTTTCAGACTTTGTGTCCAGACGACCCTGCCTGAATCTTTATCTTCTCTTAAAGTTAGACACTGAAGCTACATTAGACGTCCTCAGATGTGCTTTCATGGAAGATGGAATTTCAAATGCCAGCTCATCTTCACCAGATTCAGCCAATAAACCTATAGAGGAAGCAAAAAAGGAAAATGATATTACTGAAACTCAAAATGCTTTGGTTCAGAACACAGTTGATGCTCTCATTCAAATAATTGATGTGAATATTGTTCCCACAGATACAACCTCTGGTAGTGGTGATGATGAATTGATAAAAGAGTGTCCTTCCAAGGACATAGGTTATGTGTTTGAGTTCATTGCGTATTATGTTGCTCTCCAAAGGGCTAAGATTTCAAAGGGTGTGCTTTGTCAAATATTGGAATATTTGACATCAGATAGTCAGTTTTCAACTAATGTTTCTGTTCAAGGGTCAACTCCAAAAAATAGAGAGAAGCAAGTGCTTGCACTTTTGGAAGTACTTCCTGAGCCAGACTGGGATGCATCATTTGTGCTAGATCTATGTGAGAGAGCAAAATATCATAAGGTTTGCGGATTGATCCATAGTATCAGACATGAATATGTGGCTGCATTGGATAGTTATATGAAAGATGTAGATGAGCCTGTTCATGCTTTCTCCTTTATTAACAGAGCATTCTCACAGTTGACTGACAATGACCATGCAGCTTTTCGGTCAGCAATCATATTGCGAATTCCTGAGTTGGTTGAACTAAGCAGGGAGGGCGCGTTCCATATGGTTATCAGTCATTTTAGGGATGAAAGTTCTCGTATCATAACTGAACTTCACTCTCATCCAAGAAGTCTTTTCCTTTATTTAAAGACACTCATTGAGCTTCATTTATTTGGCACCCTAGACCTGTCTAATTTGAGAAAGGATGATACTATGAATCCCCTTAATAGAAGGCAGGTCAAGGATCACCCACAAGGAGTCAAAGATTACTTAGAGAATATATCTAATTTCCCCAAGTACATGTGTGAAAATCCTATTCAAGTGCCAGATGATCTTATTGAGCTTTACCTTGAGTTATTATGCAAGTACGAAGGTGGTTCAGTTCTCAAGTTTCTGGAAATGTTTGATAGCTATCGAGTTGAACATTGTTTACGCCTGTGCCAAGAATATGGCATTATAGATGCATCGGCGTTCTTATTAGAAAGGGTTGGTGATGTTGGTAGTGCTCTTTCACTTACACTTTCTGATCTAAATAATAAGTTTGTTGATCTTGATGCCTCTGTGGAAGCTGTAGTTTTAAACCATCGCAGAGATGGTTCTTCACATATGGAAATATTCAACAGTGTTTTAAAAACAAAGGAGGTAAATGACATCCACAATTTATTGCGTGCCTGTATTGGTCTGTGTCAGCGGAACACCCCTCGTCTAAATCCTGAGGAGTCAGAGGCACATTGGTTTAAATTACTTGACTCGTTTTGTGACCCACTGATGGATTCAAATGTTGAAGAGAGAGCACATGAAAGTAAAAATTATTTTGGAGTGCTAGCTGGATCAGCAGATTCACAACAGGACAAAGACACCCATGAAAACAGTTGGAAAATTTTAAAGTCTCAGAATGGTCATATCTTGAAAAAATTGCTATCCCAGTTCATTAAAGAGATTGTTGAGGGAATGATTGGTTTTGTTCACCTTCCAACTATCATGTCTAAACTCCTGTCTGATAATGGTAGTCAAGAATTTGGTGATTTTAAACATACCATATTGGGAATGCTGGGAACATACGGCTTTGAAAGAAGAATTCTGGATGCTGCCAAATCGTTAATAGAGGATGATTCTTTTTATACTATGAGTTTACTCAAAAAAGGGGCCTCCCATGGATACGCTCTCGGGAGTCTCGTGTGCTGTGTTTGTAATTGCCCCCTTACAAAGAACTCTGTTAGCTCTGGAATTCGGATTTTCAACTGTGGCCATGCAATTCATCTCCAATGTGAAGTTTCGGAAATTGAGGAATCGAGTAAAACATCTTCATCTGGATGCCCTGTATGCATGCCTAACCAGAAATCCCAGCAGTCTAGAAACAAATCAATCATTGCAGCAAATGGCTTGGTCAATAAATTCTCATCAAGGCACCAATACCCCCATGGAAGTTCCATTCATCCTCATGACAGTGATTTGTCAGATAATATGTATGGACAACAACAGATATCACGGTTCCAGATCTTGAGCAGCTTGCAGAAGAATCAGAGATTTATGCAAATAGAAAACTTGCCTCCATTGAAGCTTGCCCCACCTGCTGTGTACCATGAAAAGGTAAGTAAAGTGGCAAACTTTCTGACCGGAGAAACTAGCAATAGTTCCAGTGCTATTGAGAAACAAAATAGAAACAAGCATAATCGGGAGCTGAGATTTAAGGGTTCATCAATTCGATTTCCTTTAAAATCAACTATATTTGGCAAGGAGAAGACCAATAAACGGTGA | 5733 | 0.4277 | MELDLRSFLHSPTSSDDAPHRTIDDILNDCDTSSSSPSPPSSPSHSLSNNSHPQNSTLQPAPDSFSRFKPTEFSDRARVSRPFSSLLHSVRSNAKPGAALAAAAAASRSVPTPHAAAIISRRKSAAAISVESSLIAANGDDSSAVSAKGELGEPSEKFDPVPPMIPPPSESASAIGERFESDVEIATDLKAGSDDIQVHSDNNINANVNDDDDDENDNDSSIVSEEKRDLDKVDCDHEKDMNSAPFDEDDDRGFDGNDDDDERITATYAAVETEEEEEEEEEEVVNNGSSSMEDVRNEVSVGGGDDDGSSLGDVAELVEERLEELENRRAAKRAEKKRESLMKPLELAEELEKKRASTGLHLEEGAAAQPMRLEDVRRGSMTLGYFDVDADNAFTRAISSQTFRREQGSARTLAVHANYIAVGMSKGLIVVFPSKYSIHHADNSDGKMMMLAIQGDRLHAPVTSMSFNQQGDLLLAGYGDGHLTLWDVQKGVVVKVISGEHTAPVVHTLFLGQDPQNTRQFKAVTGDCKGLVLFHIISVVPLFSRFSIKTQCLLDGQSTGLVLSASPLLFDDFSGSASPFTRGNTSAPASSISSMMGGVVGGDAGWKLFNEAPSLVEEGVVVFVTHQTALVVRLSPTLQVYAQLSRPDGVREGSMPYTAWKYMTQTCSSTENMSAEAVERVSLLAIAWERKVLVAKLVKSELKVYGRWSLDGAALGLAWLDDQMLVVLTSNGQLYLFSKDGTVIHQTSFSIDGIGGDDLVSYHTHFINIFGNPEKAYHNSVAVRGASIYILGPTHLLVSRLLPWKERISVLRKAGDWMGALNMAMILYDGHAHGVVDLPRTLDAVHEAIMPFLMELLTSYVDEVFSYISVAFCNQIGKLDQSNDSNSRSNSVHSEIKEQYARVGGVAVEFCCHIKRTNILFDEIFNKFVDVQQRETFLELLEPYILKDMLGSLPPEIMQELVEYYSTKGWLQRVEQCVLHMDISSLDFNQVVRLCREHGLYSALVYVFNKGLDDFTAPLEELFAVLQNSQKESATVLGYRMLVYLKYCFTGLPFPPGRGSIPPTRLPSLRRELVEFLLKDSCTPKSQTVSDFVSRRPCLNLYLLLKLDTEATLDVLRCAFMEDGISNASSSSPDSANKPIEEAKKENDITETQNALVQNTVDALIQIIDVNIVPTDTTSGSGDDELIKECPSKDIGYVFEFIAYYVALQRAKISKGVLCQILEYLTSDSQFSTNVSVQGSTPKNREKQVLALLEVLPEPDWDASFVLDLCERAKYHKVCGLIHSIRHEYVAALDSYMKDVDEPVHAFSFINRAFSQLTDNDHAAFRSAIILRIPELVELSREGAFHMVISHFRDESSRIITELHSHPRSLFLYLKTLIELHLFGTLDLSNLRKDDTMNPLNRRQVKDHPQGVKDYLENISNFPKYMCENPIQVPDDLIELYLELLCKYEGGSVLKFLEMFDSYRVEHCLRLCQEYGIIDASAFLLERVGDVGSALSLTLSDLNNKFVDLDASVEAVVLNHRRDGSSHMEIFNSVLKTKEVNDIHNLLRACIGLCQRNTPRLNPEESEAHWFKLLDSFCDPLMDSNVEERAHESKNYFGVLAGSADSQQDKDTHENSWKILKSQNGHILKKLLSQFIKEIVEGMIGFVHLPTIMSKLLSDNGSQEFGDFKHTILGMLGTYGFERRILDAAKSLIEDDSFYTMSLLKKGASHGYALGSLVCCVCNCPLTKNSVSSGIRIFNCGHAIHLQCEVSEIEESSKTSSSGCPVCMPNQKSQQSRNKSIIAANGLVNKFSSRHQYPHGSSIHPHDSDLSDNMYGQQQISRFQILSSLQKNQRFMQIENLPPLKLAPPAVYHEKVSKVANFLTGETSNSSSAIEKQNRNKHNRELRFKGSSIRFPLKSTIFGKEKTNKR* | 1911 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso16g0152 | 1910 | CDD | RING-H2 | 1719 | 1768 | - | - | |
| Gso16g0152 | 1910 | ProSiteProfiles | Zinc finger RING-type profile. | 1719 | 1767 | IPR001841 | - | |
| Gso16g0152 | 1910 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 462 | 496 | IPR001680 | GO:0005515 | |
| Gso16g0152 | 1910 | MobiDBLite | consensus disorder prediction | 140 | 311 | - | - | |
| Gso16g0152 | 1910 | SUPERFAMILY | RING/U-box | 1713 | 1770 | - | - | |
| Gso16g0152 | 1910 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 474 | 488 | IPR019775 | - | |
| Gso16g0152 | 1910 | SUPERFAMILY | WD40 repeat-like | 408 | 748 | IPR036322 | GO:0005515 | |
| Gso16g0152 | 1910 | Pfam | Golgi CORVET complex core vacuolar protein 8 | 936 | 1120 | IPR025941 | - | |
| Gso16g0152 | 1910 | MobiDBLite | consensus disorder prediction | 28 | 64 | - | - | |
| Gso16g0152 | 1910 | MobiDBLite | consensus disorder prediction | 271 | 287 | - | - | |
| Gso16g0152 | 1910 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
| Gso16g0152 | 1910 | PANTHER | VACUOLAR PROTEIN SORTING VPS41 | 291 | 1838 | IPR045111 | GO:0006623 | |
| Gso16g0152 | 1910 | Coils | Coil | 315 | 342 | - | - | |
| Gso16g0152 | 1910 | Pfam | Region in Clathrin and VPS | 1436 | 1503 | IPR000547 | GO:0006886|GO:0016192 | |
| Gso16g0152 | 1910 | PANTHER | - | 291 | 1838 | - | - | |
| Gso16g0152 | 1910 | Coils | Coil | 1140 | 1160 | - | - | |
| Gso16g0152 | 1910 | MobiDBLite | consensus disorder prediction | 221 | 250 | - | - | |
| Gso16g0152 | 1910 | Gene3D | - | 332 | 526 | IPR015943 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso16g0152 | Gso-Chr16 | 1619676 | 1632383 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso16g0152 | K20178 | - | gmx:100785710 | 3520.32 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso7g0446 | 7 | 4286409 | 4298272 | Gso16g0152 | 16 | 1619676 | 1632383 | GST |