Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso7g0348 ATGGCGGTTTCTACGATAGCCTTGTACGCGAGTCCACCCAGCGGCGTGTGTTCCACGTCGCACCAGATCAACTGCCACGCTGGCTACGACTTCGAATTGGGGTCGCGATCTTCGTCGCCGGCGGGGTCGACGGCGCCGCCGTCGACCTCGCAGAAGCCAGTGATGGGCGGGCTCTCGTGCCTGTTTTCGTCGCCGGCGCCTCCGCGGAAGCATGCGCCGCAGCTCTCGTCGAACTTTTCCGGCGAGGAGGACGAGATGAAGGAGCTGAGCAGTTCCTTCTCGTATTCTCCGAGCAAATTCGCTGGTTCTTCGTGGAAGAGGGATCAGAGTCCCGTGTCGGTGTTTCATGGTCCTGTTTCGTGTAGCAGTAGTGGTAGAAGTTCCACGGGTTCGACCCCTATTAGAAGTTTCAGGGGTGGGACCAGTGGTTTGTTTGATGGGTTTGTGAGGAATGCGTTGGGGTCTTCATGTTTGGACTATGACTTAGATGCGGGTGATTCTTCTGCTATGGTTGATGAGTTGACCTTCAATTTGGAGGACAATTTCGTGGAGGGTGGGTTTCACTTTGAGCCATATGCTAAAAAGTTGCTTCTTGGGGCGCAAATGAGGCACAAGATCTTCTGTGAGGAGTTTGTTATCAAGGCCTTTTGTGAAGCTGAGAAAGCACACAGAGGGCAGATGCGAGCAAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCTGTGTTGCTGGCTTTGATTGGTGCCAATTCCACTGTTGTGGCGGCGGGGCTCTTGCATGACTCGCTGGATGATGCTTTTCTGACTTATGATTATATAGTTGGGGTGTTTGGCACTGGTGTTGCTGATTTGGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGAAAATAATACGGCTAGCAAGTCAGTTGAAGCAGACCGCTTGCATACTATGTTCCTTGGCATGGCAGATGCAAGAGCTGTCCTCGTTAAATTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCAGGGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTGGGAATTTCTACTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCATGAGGAGCTTTCATCCAAGCTTGTGGAATCGTACGATGATGCAATGATTACTTCTGCAATAGAGAGATTAGAGCAAGCACTTAAAGATGAAGGCATTTCTTATAATGTCATTTCTGGGCGACATAAGAGCTTGTATAGCATTTATTGCAAAATGTTAAAGAAGAAACTTACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTACAAGGCCTTGACAGTAGTTCATCGATTGTGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGTCCCAAGTTCAATGGATATCAATCTCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGGACCAAAGATATGCATTTGCAAGCAGATTTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCTTCGTTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCAGTCAAGCCCCCATGCAAGTTCCCTTCACATGCTGAGGATTGCCCATATTCTTACAAGCCTGATTGTGGTCAGAATGGCCCTGTGTTTGTTATCATGATTGAGAATGATAAGATGTCTGTCCAAGAATTCAGTGCAAACTCAACAGTATTGGATTTGTTGAAAAGATCTGGGAGAGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCATAAACCCGTTAGTGATCCCAATAGCAAGTTGAAGATGGGAGATGTGATTGAACTTACACCAGCCATACCTGACAAGTCTCTTACAGAATATAGGGAAGAAATCCAGCGTATGTATGATCGCGGGCTAACTGTGTCAAGCATGGGAACCGCCGCAAGCACCATGGCTGGCTCAAGAAGTTGA 2145 0.4732 MAVSTIALYASPPSGVCSTSHQINCHAGYDFELGSRSSSPAGSTAPPSTSQKPVMGGLSCLFSSPAPPRKHAPQLSSNFSGEEDEMKELSSSFSYSPSKFAGSSWKRDQSPVSVFHGPVSCSSSGRSSTGSTPIRSFRGGTSGLFDGFVRNALGSSCLDYDLDAGDSSAMVDELTFNLEDNFVEGGFHFEPYAKKLLLGAQMRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDSLDDAFLTYDYIVGVFGTGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLGMADARAVLVKLADRLHNMMTLDALPGAKQQRFAKETLEIFAPLANRLGISTWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITSAIERLEQALKDEGISYNVISGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQADFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSVKPPCKFPSHAEDCPYSYKPDCGQNGPVFVIMIENDKMSVQEFSANSTVLDLLKRSGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKSLTEYREEIQRMYDRGLTVSSMGTAASTMAGSRS* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso7g0348 714 MobiDBLite consensus disorder prediction 36 57 - -
Gso7g0348 714 SUPERFAMILY HD-domain/PDEase-like 195 385 - -
Gso7g0348 714 CDD NT_Rel-Spo_like 408 526 IPR007685 GO:0015969
Gso7g0348 714 SUPERFAMILY Nucleotidyltransferase 375 564 IPR043519 -
Gso7g0348 714 Gene3D Hypothetical protein af1432 195 385 - -
Gso7g0348 714 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 713 - -
Gso7g0348 714 ProSiteProfiles S4 RNA-binding domain profile. 652 688 - -
Gso7g0348 714 ProSiteProfiles HD domain profile. 234 338 IPR006674 -
Gso7g0348 714 SMART RelA_SpoT_2 428 538 IPR007685 GO:0015969
Gso7g0348 714 PANTHER - 1 713 - -
Gso7g0348 714 CDD HDc 232 360 IPR003607 -
Gso7g0348 714 Pfam Region found in RelA / SpoT proteins 428 537 IPR007685 GO:0015969
Gso7g0348 714 Pfam HD domain 219 369 - -
Gso7g0348 714 SMART hd_13 230 347 IPR003607 -
Gso7g0348 714 Gene3D Beta Polymerase, domain 2 388 518 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso7g0348 Gso-Chr7 3258283 3262705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso7g0348 235 535 EF-hand Containing Proteins AT3G17470 31.269 3.95e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso7g0348 K00951 - gmx:100789399 1418.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0348 7 3258283 3262705 Gso7g0348 7 3258283 3262705 ECH
Gso7g0348 7 3258283 3262705 Gso16g0062 16 697383 702059 GST