Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g0062 ATGGCGGTTTCTACGATAGCCTTGTACGCGAGTCCACCAAGCAGCGTGTGTTCCACGCCGCACCAGATCAACGCCCACGCTAGCTACGACTTCGAATTGGGGTCGCGATCTTCTTCGCCGGCGGGGTCGACGGCGCCGCCGTCGACGTCGCAGAAGCCGGTGATGGGTGGTCTCTCATGCCTGTTCTCTTCGCCTGCGCCGGCGGTGAAGCACGCGCCTCCGCTGTCGTCGAACTTCTCCGGCGAGGAGGACGAGATGAAGGAACTGAGCAGTTCCTTCTCGTATTCTCCGAGCAAATTCGCAGGTTCTTCGTGGAAGAGGGATCAGAGTCCCGTGTCGGTGTTTCATGGTCCTGTTTCGTGTAGTAGTAGTGGTAGAAGTTCCACGGGTTCTTCGAGCCGTATTAGAAGCTTCAGGGGTGGGACCAGTGGTTTGTTTGATGGGTTTGTGAGGAATGCGTTGGGGTCTTCATGTTTGGACTATGACTTAGATGCTGGTGATTCTTCTGCTATGATTGATGAGTTGACCTTCAATTTGGAGGATAATTTCGTGGAGGGTGGGTTTCACTTTGAGCCCTATGCTAAAAAATTGCTTCTTGGGGCGCAAATGAGGCACAAGATCTTCTGTGAGGAGTTTGTCATTAAGGCCTTTTGTGAAGCCGAGAAAGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACTGCCGTGTTGCTGGCTTTGATTGGTGCCAATTCCACTGTTGTGGCGGCGGGGCTCTTGCATGACTCGCTGGATGATGCTTTTCTGACTTATGATTATATAGTTGGGATGTTTGGCGCTGGTGTTGCTGATTTGGTTGAAGGGGTTTCTAAATTGAGTCACTTAAGCAAGCTGGCTCGAGAAAATAATACAGCTAGCAAGTCAGTTGAAGCAGACCGGTTGCATACTATGTTCCTTGGCATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCAGTGGCCAAGCGGCAGAGGTTTGCTAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTGGGAATTTCTACTTGGAAGGAACAATTGGAAAATTTATGTTTTAAGCATCTCAACCCAAGCCACCATGAGGAGCTTTCATCCAAGCTTGTGGAATCGTATGATGATGCAATGATTACTTCTGCAATAGAGAGATTAGAGGAAGCACTTAAAGATGAAGGCATTTCTTATAATGTCATTTCTGGGCGGCATAAGAGCTTATATAGCGTTTATTGCAAAATGTTAAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAAGAAGACTGTTACAAAGCTTTGACAGTTGTTCATCGATTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGTCCCAAGTTCAATGGATATCAATCTCTGCATACTGTTGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGGACCAAAGATATGCATTTACAAGCAGAATTTGGATTTGCTGCTCATTGGAGATACAAGGAAGATGATTGTCAGCATTCTTCATTTGTGCTTCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGCGAAGCAATGAGTAGAGATTGTTCATCTGTTGGATATGCTGATTCAGTCAATCCCCCATGCAAGTTCCCTTCCCATGCTGATGATTGCCCATATTCTTACAAGCCTGATTGTGGTCAGAATGGGCCTGTGTTTGTTATCATGATTGAGAATGATAAGATGTCTGTCCAAGAATTTAGCGCAAACTCAACAGTATTGGATTTGTTGAAAAGATCTGGGAGAGCAAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCACAAACCTGTTAGTGACCCCAATAGCAAGTTGAAGATGGGAGATGTGATTGAACTTACGCCAGCCATACCTGACAAGTCTCTTACAGAATACAGGGAAGAAATCCAGCGTATGTACGATCGTGGGCTAACTGTGTCGAGCATGGGAACCGCTGCAAGCACCATGGTTGGCTCAAGGAGTTGA 2148 0.4688 MAVSTIALYASPPSSVCSTPHQINAHASYDFELGSRSSSPAGSTAPPSTSQKPVMGGLSCLFSSPAPAVKHAPPLSSNFSGEEDEMKELSSSFSYSPSKFAGSSWKRDQSPVSVFHGPVSCSSSGRSSTGSSSRIRSFRGGTSGLFDGFVRNALGSSCLDYDLDAGDSSAMIDELTFNLEDNFVEGGFHFEPYAKKLLLGAQMRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDSLDDAFLTYDYIVGMFGAGVADLVEGVSKLSHLSKLARENNTASKSVEADRLHTMFLGMADARAVLIKLADRLHNMMTLDALPVAKRQRFAKETLEIFAPLANRLGISTWKEQLENLCFKHLNPSHHEELSSKLVESYDDAMITSAIERLEEALKDEGISYNVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSRDCSSVGYADSVNPPCKFPSHADDCPYSYKPDCGQNGPVFVIMIENDKMSVQEFSANSTVLDLLKRSGRASSRLTTYRFPLKEELRPRLNHKPVSDPNSKLKMGDVIELTPAIPDKSLTEYREEIQRMYDRGLTVSSMGTAASTMVGSRS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g0062 715 Pfam HD domain 220 370 - -
Gso16g0062 715 Gene3D Beta Polymerase, domain 2 390 519 IPR043519 -
Gso16g0062 715 SUPERFAMILY Nucleotidyltransferase 376 565 IPR043519 -
Gso16g0062 715 Gene3D Hypothetical protein af1432 196 386 - -
Gso16g0062 715 Pfam Region found in RelA / SpoT proteins 429 538 IPR007685 GO:0015969
Gso16g0062 715 CDD NT_Rel-Spo_like 409 527 IPR007685 GO:0015969
Gso16g0062 715 CDD HDc 233 361 IPR003607 -
Gso16g0062 715 PANTHER - 1 715 - -
Gso16g0062 715 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 715 - -
Gso16g0062 715 SMART hd_13 231 348 IPR003607 -
Gso16g0062 715 SUPERFAMILY HD-domain/PDEase-like 196 386 - -
Gso16g0062 715 ProSiteProfiles S4 RNA-binding domain profile. 653 689 - -
Gso16g0062 715 MobiDBLite consensus disorder prediction 34 53 - -
Gso16g0062 715 SMART RelA_SpoT_2 429 539 IPR007685 GO:0015969
Gso16g0062 715 ProSiteProfiles HD domain profile. 235 339 IPR006674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g0062 Gso-Chr16 697383 702059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g0062 228 536 EF-hand Containing Proteins AT3G17470 30.211 2.98e-37 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g0062 K00951 - gmx:100787301 1399.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g0348 7 3258283 3262705 Gso16g0062 16 697383 702059 GST