LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso7g0128	ATGGGGGGCTCTGAAGGGGTGGGAGCATCGTCGAAGCAATTCGGTGTCACAAAGCCCATATCAATGGCTGGCCCATCGGCTACTGATTTGCAAAGGACTCGTGAGTTAGAGAAGTTTCTCGCTGTTTCGGGGCTTTACGAGAGCAAGGATGAAGCTGCCAAGAGGGAAGAGGTTCTTCACCGGCTTGGAGAGATAGTTAAAAGTTGGGTGAAGCAACTGACCCGCCTTAGGGGATACACTGGTCAAATGGTGGAGGATGCAAATGCTATCATTTTGACTTTTGGTTCTTATCGGCTTGGTGTTCATGGTCCTGGGGCTGACTTGGACACTTTATGCATTGGGCCGTCCTATGTAACCCGAGAGGAGGATTTTTTCTACACATTGCATGATATCTTAGCTAACGTGGAGGAAGTCACAGAATTGCAACCAATTCCGGATGCTCATGTCCCAGTTATGAAATTCAAGTTTGATGGAATATCAATTGACCTCCTCTATGCCAGTATTTCTAGATTGGTTTTACCTGAAGACTTGGATATATCTGATGTCTCTGTTCTACACAATGTTGATGAGCCTACCGTGCGAAGTTTGAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCTAATATTGAGCACTTTCGTACAACACTTCGCTGCTTGAAATTTTGGGCCAAAAGGCGAGGCATTTATTCTAATGTGACTGGTTTTCTAGGTGGTGTTAACTTGGCACTTCTTGTAGCCCGAGTGTGCCAGTTTTATCCGAATGCAGTTCCAAGTATGCTTGTTTCCAGATTCTTCAGGGTATATACACAGTGGCGGTGGCCAACTCCTGTCATGTTATGTCCAATAGAGGAGAATGAGCTTGGGTTTCCTGTTTGGCATCCTGGTAAAAATCCCCGTGACAGATCCCATCATATGCCAATCATTACTCCTGCCTATCCGTGTATGAATTCTAGTTATAATGTTTCTACGAGCACCCTTCGTGTAATGATGGACCAGTTCCAATATGGCAACAAGATCTGTGGGGAAATAGAATTGAGTAGAGCTTGTTGGAAGGCTCTGTTTGAACAGTACAGTTTCTTTGAAAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGCCGATGACTTGCGCAGTTGGAAAGGTTGGGTGGAATCACGGCTTCGCCAGCTGACTTTGATGATTGAACGTGACACTTTTGGGAAGTTGCAATGTCATCCCTATCATCATGAGTTTGTGGATACTTCAAGGCAGTGTGCACATTGTGCTTTCTTTATGGGTTTGCAGAGGAAACAGGGAGAGGTTGTTCAAGAAGGTCAGCAATTTGATATACGAGGGACAGTTGAAGAATTTCGGCATTCTGTTAATATGTACATGTTCTGGAAACCGGGGATGGAGATTTATGTATCTCATGTTCGTAGAAGGCAAATTCCATTCTATGTTGTTCCTGATGGTTATAAACGATCTCGGCTATCAAGGCCAACATCACAAGTTGAGAATTGTAAATCATTTCATAATGAGGTTTCGGGGACTGAACATGTTGAGAGAATCCGTAAGAGGAAGAACAATGACGGTGTGGATGTGAGGGGGGATGCTATAGTTAAAAGGCAATCTGCTAGTCCTTCTGAAGATAGATTGGCAAGACACAGCAGCCTTGGTACTGGTGGTTTGTCTGTTGAAGCTGTATCTGATAGACAAGAGTTGAGAAATGTTGAGTGCAATCATTTGTCAAACAGTGGGCAAGATGAGTTGGATAGAACAGAGTCTCCAGAAGCTGCTTCAAATTCTAGTGTGATTACATCTGTTGGTTCTTCTGAAGATACTGGATCTGTAACAGTGGCAGGATGTGTTGAGGAAAGCACCGGGGGTGTTGAAATGATGAACAATGGCTGGTTTGAGGATAGCACTTATGGGAATGATTCTGTCACACTGGTGAAAAATATAGTGGCAAGTGGAAATGAAGTGTTTCAACATGAGCTACAGGAGCAGTTTCAGCCGAATGCAACGCTAGGGATGGTTCTTGATTCTGCAGAAAAGGTTATTTCAGAAGTTGTGCAAGAGCCGGTGATAAGGAGATTGAGACTATCATCGACAGTGTGA	2115	0.4392	MGGSEGVGASSKQFGVTKPISMAGPSATDLQRTRELEKFLAVSGLYESKDEAAKREEVLHRLGEIVKSWVKQLTRLRGYTGQMVEDANAIILTFGSYRLGVHGPGADLDTLCIGPSYVTREEDFFYTLHDILANVEEVTELQPIPDAHVPVMKFKFDGISIDLLYASISRLVLPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGIYSNVTGFLGGVNLALLVARVCQFYPNAVPSMLVSRFFRVYTQWRWPTPVMLCPIEENELGFPVWHPGKNPRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMDQFQYGNKICGEIELSRACWKALFEQYSFFESYKNYLQVDVVAADADDLRSWKGWVESRLRQLTLMIERDTFGKLQCHPYHHEFVDTSRQCAHCAFFMGLQRKQGEVVQEGQQFDIRGTVEEFRHSVNMYMFWKPGMEIYVSHVRRRQIPFYVVPDGYKRSRLSRPTSQVENCKSFHNEVSGTEHVERIRKRKNNDGVDVRGDAIVKRQSASPSEDRLARHSSLGTGGLSVEAVSDRQELRNVECNHLSNSGQDELDRTESPEAASNSSVITSVGSSEDTGSVTVAGCVEESTGGVEMMNNGWFEDSTYGNDSVTLVKNIVASGNEVFQHELQEQFQPNATLGMVLDSAEKVISEVVQEPVIRRLRLSSTV*	705

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso7g0128	704	CDD	NT_PAP_TUTase	54	209	-	-
	Gso7g0128	704	Gene3D	-	15	357	-	-
	Gso7g0128	704	SUPERFAMILY	Nucleotidyltransferase	14	208	IPR043519	-
	Gso7g0128	704	PANTHER	NUCLEAR POLY(A) POLYMERASE 4	1	599	-	-
	Gso7g0128	704	Gene3D	Beta Polymerase, domain 2	47	203	IPR043519	-
	Gso7g0128	704	Pfam	Poly(A) polymerase central domain	15	359	IPR007012	GO:0004652\|GO:0043631
	Gso7g0128	704	MobiDBLite	consensus disorder prediction	595	615	-	-
	Gso7g0128	704	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	360	487	IPR011068	GO:0003723\|GO:0016779\|GO:0031123
	Gso7g0128	704	Pfam	Poly(A) polymerase predicted RNA binding domain	361	420	IPR007010	GO:0003723\|GO:0043631
	Gso7g0128	704	Pfam	Nucleotidyltransferase domain	89	160	IPR002934	GO:0016779
	Gso7g0128	704	MobiDBLite	consensus disorder prediction	580	615	-	-
	Gso7g0128	704	SUPERFAMILY	PAP/OAS1 substrate-binding domain	210	358	-	-
	Gso7g0128	704	Gene3D	Poly(A) polymerase predicted RNA binding domain	361	477	-	-
	Gso7g0128	704	PANTHER	POLY A POLYMERASE	1	599	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso7g0128	Gso-Chr7	1189991	1195174	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso7g0128	K14376		-	gmx:100798218	1404.42

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso7g0128	7	1189991	1195174	Gso7g0128	7	1189991	1195174	ECH
	Gso7g0128	7	1189991	1195174	Gso8g1664	8	16293300	16298545	GST